BAC Information

Click to search

BAC

Clone NameMSMg01-265L08
Chromosome10 (Build37)
Map Location 114,893,289 - 114,893,855
singlet/doubletsinglet
Overlap geneLgr5
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
Downstream geneA930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L08.T7 (MSMg01no265_l08.b1)MSMg01-265L08.TJ (MSMg01no265_l08.g1)
ACCAG406897AG406898
length817754
length of high quality
(start - end)
---558 (77 - 634)
definitionCHROMAT_FILE: MSMg01no265_l08.b1 PHD_FILE: MSMg01no265_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:17 2005CHROMAT_FILE: MSMg01no265_l08.g1 PHD_FILE: MSMg01no265_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTATTATGAAAGGGAAAGTATGGATGTCGCATATTATATTATCGTTGT
TGCTCCCGTCCCTTTTATTTGTTTCGTTGGGGTAGCGCGCGCCGAAGATT
GTCGTCACGTCATAGGCTGCATATTTTATTTTTCTCTAATTATACCCAAT
CTAAATGTTCTCGAGACTTCATTGGTATGTCCAAGCAGAGAGGAGAAATG
AAAGCTTGTCATGTTTGTGGTTAGGTGATCTGGGGGAACAAGGGGGGGAG
AAGAAGGAAGTGAGGGTGNGGGGGGATTCTCCTAATAAAAATTTTGCCCG
GGGCCCCGCCCCTTAAAAATTTAAAACCGGGTAAAACCTTTCTCCCAACC
CTTAAATTTAAAGAGGGGTCTTAAAGGTTAAAGAGGGTAATCCCTCCGTC
CGGTGGTAAAATTTTTCCTTTCCCTTTTTTTTGGGTTTAACAACCCCCTT
TTTTGACCCTTTGACCCCCCCCCCCAAAAGCGCCCTAATAAATTTCGTGC
GGGCTCCCTAGAACAAGTTAAATTTTAGTTAAGAGTTCTCCCCCCAAACC
CCCCCGAAAATCCCCCCCCTTTTTTTTTTTGAGGAGGATACCCATATTTT
TACTTTCATCTTTTTAACACCCCCCCTATTTTGTCGGGAGAGAATATATA
ATTATACATTTCACCCTCCCTCCCCTAGTGGTGAATCACTTCCAGGGGAG
CCCTTTAAATATTACNAAAAAACACTTTCCCGGAAAAGGTTCCCCCCCCC
CCCAAAAAGGGCTTTTTTAAACCCAAAAAAGGGCCCAAAAGGGGCATTTT
TTTTTCCCCCCCCCCCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGCCCTTCTGCTGCAATACGG
AGGAATTTCAAATGTCCCATCCCCCTACCCCCTTTCTCTGGGCCAGAAAA
TTAAGCATGGATTTTTTTTTCTCTCTCAGAGTGAGAAATACAGGAGAATA
TTTGAAAAATGGGATAAGAGCCTTTAAAAAAAAGTTTGGAAATGTTGATG
GAGTGATCGTCTTTGAGCACTGTGTATGCTAAGGAGGATCTAAGTACAAA
TAAAATTGCCAAGAATTTACTTATAAAATAGGCGGCAATTCTTCTTTGTG
AGTCTTTACAGAGTAAGACTGATTCTCCATTTGCTGGGTGATTACACAGG
GACTCCTGGCTTTCAGGGCCCATGTACTAACGTTTCACGACCTTTCTGAC
TATAGCTTCCTCCCCATGACATCAGTTCTTACCTTGAACTTGAAATAACC
CAGCGTCTTTCTTATGAAGGTCGTCCACACTGTTGCCGTCGTCTTTATTC
CATTGGTTAGAAATTTTATAGACATTCTCACACCCCCCAAATGCACAACA
CTGGTAAGCAGACGGCATTTCTATAATCCTATACAGGAGGGGGACAAAAC
CAAAAACATATTACGTAAGGATGATGGGTCATGAAATAAAATGTTTATCT
TTTCATCCAATATATAAAGTTTACTTTGGAAGTTTAACCTAAACCAGGTA
CCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l08.g1 MSMg01no265_l08.g1 CHROMAT_FILE:
MSMg01no265_l08.g1 PHD_FILE: MSMg01no265_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:18 2005
         (558 letters)



>mm_chr10_114893089_114894055
          Length = 967

 Score = 1019 bits (527), Expect = 0.0
 Identities = 554/567 (97%), Gaps = 9/567 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggcccttctgctgcaatacggaggaatttcaaatgtcccatccccctaccccctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttaggcccttctgctgcaatacggaggaatttcaaatgtcccatccccctaccccatttc 260

                                                                       
Query: 61  tctgggccagaaaattaagcatggattttttttt----ctctctcagagtgagaaataca 116
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 261 tctgggccagaaaattaagcatggatttttttttttttctctctcagagtgagaaataca 320

                                                                       
Query: 117 ggagaatatttgaaaaatgggataagagcctttaaaaaaaa-gtttggaaatgttgatgg 175
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 321 ggagaatatttgaaaaatgggataagagtctttaaaaaaaaagtttggaaatgttgatgg 380

                                                                       
Query: 176 agtgatcgtctttgagcactgtgtatgctaaggaggatctaagtacaaataaaattgcca 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgatcgtctttgagcactgtgtatgctaaggaggatctaagtacaaataaaattgcca 440

                                                                       
Query: 236 agaatttacttataaaataggcggcaattcttct----ttgtgagtctttacagagtaag 291
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 441 agaatttacttataaaataggcggcaattcttctgtctttgtgagtctttacagagtaag 500

                                                                       
Query: 292 actgattctccatttgctgggtgattacacagggactcctggctttcagggcccatgtac 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 actgattctccatttgctgggtgattacacagggactcctggctttcagggtccatgtac 560

                                                                       
Query: 352 taacgtttcacgacctttctgactatagcttcctccccatgacatcagttcttaccttga 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacgtttcacgacctttctgactatagcttcctccccatgacatcagttcttaccttga 620

                                                                       
Query: 412 acttgaaataacccagcgtctttcttatgaaggtcgtccacactgttgccgtcgtcttta 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgaaataacccagcgtctttcttatgaaggtcgtccacactgttgccgtcgtcttta 680

                                                                       
Query: 472 ttccattggttagaaattttatagacattctcacaccccccaaatgcacaacactggtaa 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccattggttagaaattttatagacattctcacaccccccaaatgcacaacactggtaa 740

                                      
Query: 532 gcagacggcatttctataatcctatac 558
           ||||| |||||||||||||||||||||
Sbjct: 741 gcagatggcatttctataatcctatac 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 967
Length adjustment: 10
Effective length of query: 548
Effective length of database: 957
Effective search space:   524436
Effective search space used:   524436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)