BAC Information

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BAC

Clone NameMSMg01-265L19
Chromosome10 (Build37)
Map Location 13,131,287 - 13,131,595
singlet/doubletsinglet
Overlap genenone
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
Downstream geneFuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2, Gpr126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L19.T7 (MSMg01no265_l19.b1)MSMg01-265L19.TJ (MSMg01no265_l19.g1)
ACCAG406917AG406918
length706731
length of high quality
(start - end)
317 (23 - 339)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no265_l19.b1 PHD_FILE: MSMg01no265_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:19 2005CHROMAT_FILE: MSMg01no265_l19.g1 PHD_FILE: MSMg01no265_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTCAGGGCTCTCTTTC
CTTCTCATTGGGGTGCATATGGCCATCTGTAACATAAAATGTGGGAGGGT
ATCAAAATAAGGGCCAGGGCATAGCTAGGAAGCCTTTTTATCGTGAATGT
ATCAAGTCTCGTCTTACAGAGTGTACTCTGAAAGTCTGAATTAAAAATAT
GTTGGCTCATCAGTCATTTGAGTCTGGAAACATTTAAATAATTAAGCTAC
CAACCCAGGCAGCTCTACTGAGTGCTCATGACTGTGGATATGTCCCTGTT
CTTCTCGTCAGAGCCAACTAAATGTGGCCCATGGGTCTGNATTTCTTCTC
CATGCCTCCCACTGACGTCACCTTAGCATCACACCAGGACACCTACCGCC
TGAAAAAAACATTTCTCCCTCTACCTAGTTAGCTTTTAGCACTCCACTGG
CACACTTACCTTAGTTCATACATATTGTAGTGACCATCATCTAACCGATC
TTCTTAATAAAGACCCTTGTTCCTTATCCAGCTATATGTTGAGTCTAATG
TGTCACACCCTGGGAAGTTTTCTAAATACGCTCTTACTATAAAGAGTCTA
AAATTATCTTGCTTTCAAAACACGATTTGAAGATGTAACTGGAAAAGGAT
GGCTTTAAAGAAGTTGTGTTATTCATAATAAGTCATTATACTTCTCATTT
TTCGTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCACAGAAGTAACGGTGAGGG
AGAAAGCCGGTATCCACACAGCAATCCTGATGCTAAGAAAGAATCACGAA
CGGGTGATAAAATTAGAAGGGACCAGAGTAACATGGTCTCAAAATATACT
CCCAACAAAAACGTGCTAGTTGCAGGGGAAATGTTTTACAGCAGATAAAT
CTGACTAAAATCACCTTAGCCAAAGGGCCAAACTCAACGTCAATGGCAGC
TCAACAAACCAACCTGGGGCAGGACTTGCTGCAAAACACCCAGAAATGCA
CGGCATAACTTTGATAGTTACTTTCCCCCCCCCCGCACAACCCAAATTTA
TTCATGAAGAAACCTTAGACGACCCCAAATTTAAATGTTTCTGGAAAAAA
AAATAACTAGTCCGCATTTTTTAAGAGTCATGGCTGACAAAGGAAGATTA
AGGAAGCATTCTGGACTCAAGCGACTCACACCAAACAAGCAAAGCAGCCT
GGGTAAGGACAGAGGGAGACCTCCTTGCTCAAGGTCATGCACTGCAGAAC
TGGTCTAGAAGGAGACATGACAGGAGTGTGTCCTCCTGGCTGAGACCTTG
GGACTTAGTGTGAAAAGTGGTAAAATTTGCATGAAGCCTGTTGGCCATGA
AGAGAATCATATCAATATTAATTTCCTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l19.b1 MSMg01no265_l19.b1 CHROMAT_FILE:
MSMg01no265_l19.b1 PHD_FILE: MSMg01no265_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:19 2005
         (317 letters)



>mm_chr10_13131083_13131799
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttcagggctctctttccttctcattggggtgcatatggccatctgtaacata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttcagggctctctttccttctcattggggtgcatatggccatctgtaacata 264

                                                                       
Query: 65  aaatgtgggagggtatcaaaataagggccagggcatagctaggaagcctttttatcgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgtgggagggtatcaaaataagggccagggcatagctaggaagcctttttatcgtga 324

                                                                       
Query: 125 atgtatcaagtctcgtcttacagagtgtactctgaaagtctgaattaaaaatatgttggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtatcaagtctcgtcttacagagtgtactctgaaagtctgaattaaaaatatgttggc 384

                                                                       
Query: 185 tcatcagtcatttgagtctggaaacatttaaataattaagctaccaacccaggcagctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatcagtcatttgagtctggaaacatttaaataattaagctaccaacccaggcagctct 444

                                                                       
Query: 245 actgagtgctcatgactgtggatatgtccctgttcttctcgtcagagccaactaaatgtg 304
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 445 actgagtgctcatgactgtggatatgtccctggccttctcgtcagagccaactaaatgtg 504

                    
Query: 305 gcccatggg 313
           |||||||||
Sbjct: 505 gcccatggg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)