BAC Information

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BAC

Clone NameMSMg01-265N02
Chromosome10 (Build37)
Map Location 129,008,211 - 129,008,500
singlet/doubletsinglet
Overlap geneOlfr794
Upstream geneErbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194
Downstream geneGA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265N02.T7 (MSMg01no265_n02.b1)MSMg01-265N02.TJ (MSMg01no265_n02.g1)
ACCAG406971AG406972
length785760
length of high quality
(start - end)		319 (46 - 364)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no265_n02.b1 PHD_FILE: MSMg01no265_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:26 2005CHROMAT_FILE: MSMg01no265_n02.g1 PHD_FILE: MSMg01no265_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGTTTCTATGCTATGGAACCAGTTGTCATGGACCACTCATTGA
GGTGTTGTGGTCATGTGTTCCAGGACAGGAAGCTGGTCAGGAGTAGATTC
AAACATCTACCATTCTCAATTATGAGAATTGCCAGGATTAATTAATCTGC
TTGTCCTTACCAGGCTTTCTGTCTGGTGTCTTGGTTCCACTTGCCCCACA
TCACCTCTGGAATCATGAGCTAAAATAAACCCTGCTTTCCTGAAGTTGTT
TTTGGTCATGATACTTTATCAAACAACAGAAGAATAACTAGAAAAGATAT
CTTACAAGTCCCGTTTTTTGTTCTTACCCCCCCCCACCTTGCTAAATGTA
CATTGAGGGTGGTGGGCTGCGAACAGACAGCCTGAACTTCTGTAGAGCAT
AGGTCTGGAACCCCAGAGTCCTGGTGGGTGGTGATTTCCACCTGCATAGG
AGAGAAGGAGTTCAGCCATGCCTCCTGGTCACCTGGCTCCTGTCATGTAA
GTTACGTCTAGCACACCCCCCTGCAGAGAGATATGGGCATCAATCACATA
ATTGCTGCATCAAGCCCTCCTGCATGCCAATAAGGTTTTCCCAAGCTCTC
ATTCCAAGCCCATGAGAAATAACCTGCTGTTCCAACCCTGAAAGCTTATC
TTCCAGAGTAGCTAAGTCCTCAAAATTGGTATTATAATCCTAATCCCGGG
AATAATAAGGTGTGTGGAGAACTACTCTGGACATC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACTCTAACACCATTGATCAC
TTTTTCTGTGATGCATCGCCTCTTATCAAAATCTCATGCTCAGATACATG
GTTTTTGGAGCAGACTGTCATTGTTTGTGCAGTGCTGACTTTCATCATTA
CATTAATAGTCGTGATTCTCTCTTACATATACATTATCCGGACAATTCTC
AGATTCCCTTCTGCTCATCAGAGGAAGAAAGCATTTTCCACCTGCTCTTC
TCACATGATTGTAGTTTCCATCATGTATGGCAGCTGCATTTTTATCTATG
TGACACCTTCTGCCAAATATATAGGTAGACATCCATAAAGGAGTATCTAT
GCTCAATACATCTGTTGCCCCTTTGTTAAATCCATTTATTTATACTTTGA
GAAATAAGCAAGTGAAACAAGCTTTTAATGATACAGTAAAAAAATTGCAT
ACCTCTTACACCAATAAGAACATGTTGGATTTAAGCAGTTAGTTGGCTAG
TTTTCATTTTTCTGGAGGTTTTAACTATTTCAGCCAGGTTAACTTTTTCA
TAATCCTTTACATCTTGATTTGGAAACCCAGTTATGTCAGGAGCCATTGT
AGGATAAGTTAATAACTAGCAGATGGTCTTCCTGAGATGAGTCTACCTTG
GGATACAATACATGATGGATTTGCTCCAGTAGGCAAGGCACAGAAGAAAT
CATTTTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_n02.g1 MSMg01no265_n02.g1 CHROMAT_FILE:
MSMg01no265_n02.g1 PHD_FILE: MSMg01no265_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:26 2005
         (290 letters)



>mm_chr10_129008011_129008700
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgactctaacaccattgatcactttttctgtgatgcatcgcctcttatcaaaatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgactctaacaccattgatcactttttctgtgatgcatcgcctcttatcaaaatctca 260

                                                                       
Query: 61  tgctcagatacatggtttttggagcagactgtcattgtttgtgcagtgctgactttcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcagatacatggtttttggagcagactgtcattgtttgtgcagtgctgactttcatc 320

                                                                       
Query: 121 attacattaatagtcgtgattctctcttacatatacattatccggacaattctcagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacattaatagtcgtgattctctcttacatatacattatccggacaattctcagattc 380

                                                                       
Query: 181 ccttctgctcatcagaggaagaaagcattttccacctgctcttctcacatgattgtagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttctgctcatcagaggaagaaagcattttccacctgctcttctcacatgattgtagtt 440

                                                             
Query: 241 tccatcatgtatggcagctgcatttttatctatgtgacaccttctgccaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccatcatgtatggcagctgcatttttatctatgtgacaccttctgccaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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