BAC Information

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BAC

Clone NameMSMg01-265P11
Chromosome10 (Build37)
Map Location 40,597,973 - 40,598,210
singlet/doubletsinglet
Overlap geneCdc40
Upstream geneLOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik
Downstream geneWasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P11.T7 (MSMg01no265_p11.b1)MSMg01-265P11.TJ (MSMg01no265_p11.g1)
ACCAG407080AG407081
length744752
length of high quality
(start - end)
313 (45 - 357)240 (129 - 368)
definitionCHROMAT_FILE: MSMg01no265_p11.b1 PHD_FILE: MSMg01no265_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:37 2005CHROMAT_FILE: MSMg01no265_p11.g1 PHD_FILE: MSMg01no265_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGTTCATTTTGAGACAAACTCACTGTTCTGATCAGGCTAACATG
GAACTTATGAGCTCATTTGATACTCCTGTCTCAGCATCCCAAATAGCTGG
GACCAGCAGTACATGTCACCATGTTTAACCCAAGTGAAGGATGCTGTGGT
TGTTTGAACAGATATGGCTTCCATAGATTCGTGTGTTTGAATGCTTGGCC
CTTAGGGAGTAGCACTGTTAGTAGGTGTGGCCTTGTTGGAGGAAGTATGT
CACTCTGGGGGACAGTCTTTGATGTCTCCTCTGCTCAAGCTCCACCCAGT
ATGGAATCTTGNCTCNCTTGACCCCCCCCCCATCAAGATGTAGAACTCTG
GGCTCCTCCAGCACCCCGCCTGCCTGCAAAATGACATGCCTCCCACCATG
TTGATAATAGACTAATTCTCTGAACTATAAGGCAGACCCAATTAAATGTT
GTCCTTTATAAGAGTTGCCTTGGTCATGGTGTCTGTTCATAGCAATAAAA
TCCTAAGATGGATGCTAATAGTTAATAGGCAGGGTTAGTGGTTGCTAAAG
TAGCCTGAACTCAAGTTAGGCAATGAACCCATGCAAATGTAACTTGTATT
TGAGTGAGAGTCATTGTTTACATTTACTATTCAGTCCACAGTATGTAAAA
AGACTCACAGTCACCCAAGGTAATCCGTGTCCAGCATTAGACCA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTAATAAACTAAACCTAGT
AAAATATCCAAGATGGAGTACTGAGCCCTAACACTGTGAAGATAAACTAG
AAAGGTAATCACCAACCACTCTATTAAAGGACAGCCTAAAGAAAGCACTT
TGACAGAAAGCAGACATCTTTGCAGATAAGATGTAAAAAGGCCTGTCACT
CATGTCTGTCTTGTGTGTACGTGTGCACACATACCAAACAAACTATCCCA
AAAGGTAGGGATGGGAGTGGAATTGAAGTAGGGCCTGTACTGCTTAGAAG
CTGAAGCTACTGAGTGTTTCTTACATGCACCCCCCAGGGTAACCACTTCA
AGAAACTTGGGGTATCATCCGCACGTGACAGCAGATAAAAAGAACACTGA
CTAAAAAAACCACCCAGAAGCATGGGTGCCTGACATGTTTCCTGCCTTTC
TTCTACTACATCTATAGCAAGACATTAACAGTCTTAGATGTACAAGCGCA
TACTTTATAAAAACACGGAGATGGCTGTACCTCACTGGTTTTATATTACC
TTCCTTTATTTTTTCATTTAATGTGTATGTATGTATATATTTTTACTATT
ATTATGGGCAGAGGATGTAGCTCAGGCAACAGAATGTTTCCTTAGCATAC
ACAAAGTCCTTGTTGTGCATGGAAAGGATGGTACAGGGTTTATAATCCGC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p11.g1 MSMg01no265_p11.g1 CHROMAT_FILE:
MSMg01no265_p11.g1 PHD_FILE: MSMg01no265_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:38 2005
         (240 letters)



>mm_chr10_40597773_40598412
          Length = 640

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacactgtgaagataaactagaaaggtaatcaccaaccactctattaaaggacagccta 60
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 taacactgtgaagacaaactagaagggtaatcaccaaccactctattaaaggacagccta 260

                                                                       
Query: 61  aagaaagcactttgacagaaagcagacatctttgcagataagatgtaaaaaggcctgtca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaagcactttgacagaaagcagacatctttgcagataagatgtaaaaaggcctgtca 320

                                                                       
Query: 121 ctcatgtctgtcttgtgtgtacgtgtgcacacataccaaacaaactatcccaaaaggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcatgtctgtcttgtgtgtacgtgtgcacacataccaaacaaactatcccaaaaggtag 380

                                                                     
Query: 181 ggatgggagtggaattgaagtagggcctgtactgcttagaagctgaagctactgagtg 238
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ggatgggagtggaattgaagtagggcctgcactgcttagaagctgaagctactgagtg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)