BAC Information

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BAC

Clone NameMSMg01-266H21
Chromosome10 (Build37)
Map Location 7,170,782 - 7,171,066
singlet/doubletsinglet
Overlap geneLOC626333
Upstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558
Downstream geneLOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266H21.T7 (MSMg01no266_h21.b1)MSMg01-266H21.TJ (MSMg01no266_h21.g1)
ACCAG407466AG407467
length741737
length of high quality
(start - end)
354 (388 - 741)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no266_h21.b1 PHD_FILE: MSMg01no266_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:17 2005CHROMAT_FILE: MSMg01no266_h21.g1 PHD_FILE: MSMg01no266_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGAGGAATACTGAAGGGCTGAGAAGCACTTGAAAAAATGTT
TAACATCCTTAATCACCATTGACCCGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
GTGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGG
ATGGTGGGATTGAAAGCTTGTACATCCACTCTGGAAATCAGTCTGGTGGC
TCCTCAGAAAATTGGACATAATACTACTGGAGGATCCAGCAATTCCTCTC
CTGGGCATATATCTTTTATGTATGTCCCCACTCCCAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCCTATTTGTAACAGCCAGAAGCTGGAAAGA
ACCCAGATGTCCCTCAACAGAGGAATTGATACAGAAAATGTGGTACATTT
ACACAATGGAGTACTACTCAGGTATTAAAAACAAGAGTATATGAAATTCT
TGGGCAAATGGATGTACCTGAAGGATATCATCCTTAGTGAGGTAACCCAA
TCACAAAAGAATTCATTAGATATGCACTCACTGATAAGTGGATATTAGCC
CAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACAAGAAAATCAA
GAAGAAGGAAGACCAACATGTGGATACTTCATTCCTCCTTC
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCTCCACAGTCCAGACACTGA
GTTGCTAATGTTGAAACTGCTGCAGAGAGTAGGGGACTCTGTGGAAGAAA
CATGCAGTGAGGTTAGGGCTGGGGAGCAAGGGACTCAGGGACGTTCTCTA
CCTGATGATCCTTCTGGAAAAATGATGTAAGGGATGGGGGCAGGGGGGAA
TCCCTGACCCATCTTCACTATGCTAAATAATTCATGCTCATTCTCTCCTG
CTCTCTATCAGTACAATCCACCTGTCTGTTATATATGACCTTCTTAGCCA
TGGGCACTGTCTTTCATTCCATGCCAAGCCCAGGCCGCCTTTTCTAGATC
TATTTACTCTGGAGAGTCTCCCCAAACTGAAAAAAAAAACTGTGTGGAGA
CAGGATGGTGTGTGAAGATGCTGGGTCATAGTGGAGCAGGACAAGGGTGT
TACTGAAGTTGCTTAGAGAGTTTTTCTGATCTGTACTCTCATCATAGAGT
TGGACATCTATAAGAAATTTTAACTGTCAGTGTGATCGAGCCTATATTCT
CCTAAGAAATGAGTGTCTATATTGCTGTCTACAGAGCTAAAGGAAAACCT
GATGCAGTGAAAAGGGGGTGAGCAAGGCTGACAAGAAAAGAACAAGAAGG
AAGAAGATGAGGAAGAGAAGGAAGAAGAGGAAGACNA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_h21.g1 MSMg01no266_h21.g1 CHROMAT_FILE:
MSMg01no266_h21.g1 PHD_FILE: MSMg01no266_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:17 2005
         (287 letters)



>mm_chr10_7170582_7171268
          Length = 687

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctccacagtccagacactgagttgctaatgttgaaactgctgcagagagtagggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atagctccacagtccagacactgagttgctaatgttgaaactgctgcagagagtagggga 426

                                                                       
Query: 61  ctctgtggaagaaacatgcagtgaggttagggctggggagcaagggactcagggacgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctctgtggaagaaacatgcagtgaggttagggctggggagcaagggactcagggacgttc 366

                                                                       
Query: 121 tctacctgatgatccttctggaaaaatgatgtaagggatgggggcaggggggaatccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctacctgatgatccttctggaaaaatgatgtaagggatgggggcaggggggaatccctg 306

                                                                       
Query: 181 acccatcttcactatgctaaataattcatgctcattctctcctgctctctatcagtacaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 305 acccatcttcactatgctaaataattcatgctcattctctcctgctctctatcaatacaa 246

                                                        
Query: 241 tccacctgtctgttatatatgaccttcttagccatgggcactgtc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tccacctgtctgttatatatgaccttcttagccatgggcactgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)