BAC Information

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BAC

Clone NameMSMg01-267H23
Chromosome10 (Build37)
Map Location 37,458,477 - 37,458,766
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267H23.T7 (MSMg01no267_h23.b1)MSMg01-267H23.TJ (MSMg01no267_h23.g1)
ACCAG408202AG408203
length1,625738
length of high quality
(start - end)
---290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no267_h23.b1 PHD_FILE: MSMg01no267_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:35 2005CHROMAT_FILE: MSMg01no267_h23.g1 PHD_FILE: MSMg01no267_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTCCATCACGTTTCTCTTTTTCACGCACCTCCGTATACGTTCGTTCTT
ACGTCGCGCCCTCGCNTCATTTTGTACCATATGCAATTACTGTGTGGGGG
CGCCGCGGATACCGCGTAATATATCATACATAACTGCACCCGAGAGAGCA
CATATGATAGCCACGTCTACCTCTTTCGCGATGCAAGACTCAATCACACT
CCGAGTTCATCACCGCGCACGGGAAGGACTCAGTCGCCTTAGAGCGTTCT
TCTTCTCGCCGTCCCGGTTTATCTCATTCTCTCGGTGCGCGAGGCGCACG
CGCGATTACCAGGTCTATAACTACAGTTTATTCGGAGGCGAGTACAGCCG
TCGCGATGTGGACGAAGCGTCCACAACGAGTCTCTCGCTCGTACGCATCT
CCTCCATCGCACTAACCACCGCGTCCTCCCCACGTCGCTCCTACCCACTG
TTCTCTCGTTATACAATATAGAGCCTCGTCTATCGACGTACTACGCACGA
AATTTTCTACATTGGTAGGTGATCGCCGGCGGTGTCGTCCGGAGTGCGCA
TCNAATATTCTCGATTGTTATATTTGGTTAAGTATTTGCACACATTCTCC
GAGACGAGCTCAGAGTCCCTATTCATATCCGCCAACCATAGTAGTGCACG
CCGCCCTGCCGATGATAAATGCCGCAGCGGCCATCGTCGGAGATCAGCGG
AGGTCTAGATCTGCGCGACCCGACCACACCAGCACTCGTATATTATTATT
GTTATGTGAGACCGCGGCTCAGCGCAACGACCACGAAGAAAACATTATGC
GCGGNACCGGGACGGAGATGAGGAAATATACGTAGAGCCACGAGTCAAAG
CGATGCGGAGAGTGATGACGCCAGATAACTATACGATAATATGCAGGCGG
GACTGCTACGCGAACTCNTGTTATGAGATCATATATCGACACGACATCGG
TCGGCACTGCAACGTCACCCACATCAATACTATCATACCGAAGGCGAGAG
ATGTGCGCACGGCTGCGCGCAGACACTAACTACACTACACTTGTGATAAC
TCTCTATAGTACTCGCGACACGACACTATACAGCTACTCAGCTATGAAGG
TATTAGTCATATCGCACACATCATCAAACACGTACACTCAGACATGTGAG
GAATAGAGAANGCGACCACTGCANCANGATGCGAATGTGGCGACGGGGGT
GAGTGAGATAGCGNTAGCTCAGAAAAATAATAAAGCTGGAGAGAGATGAC
GACGCATAACACGCCTCACGAGAGAATGATGAATAGATAACTATAATACA
TAATGAAAGTATGCGTGCACTGCGCCGATGCAGCGTAGCTNTACTCGCGC
GGACGCTAGACGAGGGTCATTCGCGATTCTNTGATGCGCGGACGCGACAG
TTATGATCGTATACAGCGTACATCGTATGTAGTATATCTGTATTATCGAT
GTAGTGAAGACTGCGTCCGACGTACTACGCATGTATATAACCNCAGTACT
AGAGACGNGATCATCACAGCAGCATGACGNCACGCTCATGATCATATGAT
ATATACGTNTGTCATCGTATGTGCGCGCCGTATGTGTAATTCATTTATGT
CTGAGANCGTATGGCATGACGGAAN
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCCTCTGGATTTGATAACCGACT
AACTCTGCTTCTTGACAAAAGGAGAACTTTAATTTGGTAAATGTAAATGT
GCTTCATGTTCATGTTATCGTGTTGTTTGAGACAACAGACAAACCTGTGC
AGAACTTCCAAGGCAAAGAACAAAATCTGCTCTGGATGTTGAGTCACTAG
CAAGTATCTTGAGATAACTTTCCAGATTCTGTCTTCATAATTACAGATCT
CTAATGGTGATGGTTACCCAGAAACAACATTGTGCATGGTACCAAACCTG
CAAAAACCCCTGTGTCTTTATTCAGCACCCCCCCGCTAGTTCATCTGTTG
TCCAGGGTATTAATGAAGTGGCTGAATGAAAGCTGTGAGTGTCAAACAAG
GAGGCAGAACCCATTTAAGTCATGACATTAGCAGAAGGCTAGACGGTTGG
CTGGTCTGAGCCCCATATGACTCTGTCAGCAGAAGCAACCTCATGGTGTT
GTCAAGGAGAATGGAGGCATGGGTGGGTGGAGTTTGTCATTTCTTTGAAC
CCATTCTTGATATGTTTCCAAAATCACAAGATGAGACTTATTGTCTGTTG
CTTATTAATCAATAATTGGAAATCAAAGTTCTAGTCAGAATTAAAGAGAG
GGAGGCAAGATGGCAAGATTTTGTCACAAGCATGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_h23.g1 MSMg01no267_h23.g1 CHROMAT_FILE:
MSMg01no267_h23.g1 PHD_FILE: MSMg01no267_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:35 2005
         (290 letters)



>mm_chr10_37458277_37458966
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcctctggatttgataaccgactaactctgcttcttgacaaaaggagaactttaatt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 490 caggcctctggatttgataaccgactaactctgcttcttgaaaaaaggagaactttaatt 431

                                                                       
Query: 61  tggtaaatgtaaatgtgcttcatgttcatgttatcgtgttgtttgagacaacagacaaac 120
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 430 tggtaaatgtaaatgtgcttcatgttcatgctattgtgttgtttgagacaacagacaaac 371

                                                                       
Query: 121 ctgtgcagaacttccaaggcaaagaacaaaatctgctctggatgttgagtcactagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgtgcagaacttccaaggcaaagaacaaaatctgctctggatgttgagtcactagcaag 311

                                                                       
Query: 181 tatcttgagataactttccagattctgtcttcataattacagatctctaatggtgatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tatcttgagataactttccagattctgtcttcataattacagatctctaatggtgatggt 251

                                                             
Query: 241 tacccagaaacaacattgtgcatggtaccaaacctgcaaaaacccctgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tacccagaaacaacattgtgcatggtaccaaacctgcaaaaacccctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)