BAC Information

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BAC

Clone NameMSMg01-267I03
Chromosome10 (Build37)
Map Location 98,257,781 - 98,258,434
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667438, EG432494
Downstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267I03.T7 (MSMg01no267_i03.b1)MSMg01-267I03.TJ (MSMg01no267_i03.g1)
ACCAG408210AG408211
length724728
length of high quality
(start - end)
49 (253 - 301)653 (76 - 728)
definitionCHROMAT_FILE: MSMg01no267_i03.b1 PHD_FILE: MSMg01no267_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:36 2005CHROMAT_FILE: MSMg01no267_i03.g1 PHD_FILE: MSMg01no267_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAACTACTATATTCGGAAGTCGCGNGGAANNNNAGGGAGATTTCCAAAAA
AGAGGNAANGNNNGAAGGNAGAAAAGAGNAGNNGGAAAAGGNGGGGGGGN
GCCCCCNCAAGCCCCGAAAANGGAGGCAAGGGCCCAGGACCAGCANCNAA
AAAAAGGAAAAACACACAGGCAGGGAGGCTAAAGNCNAAGGNGGCNNGGN
CNGGNNNNAGNNNNCCGAGACAGGGNNNCNCNATATAGTCCTGGCTGGCC
GGGAACTCACTCTGTAGACCAGGCTGGCCTCGAAATCCGTCTGCCTCCTT
ATTTTTTTTTCNAAAGGCGNGCGCCACCACGCCCGGCCTTTTAAGTGACC
CCCCCCCCCCCCCCCCNANNNGGNNNGAGANAGAGNNNNGGNNGGNNNNA
AAAAANNNAAAANNNAAANGGGGGGGNNGGNNGGNGNNNNNAAGGNANGN
AGGNNNAGGAAAGAACAGAAAGGAAAANAAGGAGAGAAGAGGGGGGAGAA
AAAAAAGGAGAAGAAGGGAGAAAGGAGGGGGAAGAGAAAAAAAAGGAAAA
AGGAAGGGAAGAGAAGAAACGGAAGGAAAGGAAGAGGGAAGAGGAAAGAG
GAGAAAAGAGGAGGGGAAAGAGAGAGGAAGGAAGAGGAGGAGAAGGAGTT
AAGGGGGGAAGAAAAGGGAAAGAGAGCGGAGACGAAAGACAACAACCAAG
CCGGGCGGCAGGAGCCAGGGAAGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGCTAAACTAGGGCCACCAAGGTC
CTTTTTGTATGCCTAATGAAATGACCCCATTGGAGAACTTTCTTTTATTC
CCAGCAAGCACAACAGAAAAGGGGCATAAGGAGTAAAGAGTTAGACTGTA
TATAGTGTTTTGAATTACTGACTGTATGAGTACAGGAAGTATTTTAGATT
TTAAACTGCTTTACTGGCAGAAACTGTATGTCAGACAATATGCACTCGCT
TCATAAATAGGAACAGAGTGATACTGTCCAAGTTTGCAAATGAGTATAAA
CTGAAATTTTTTTTTAAAAAAAGACTATTTTCCCCAACCAATGGCACAGG
TAAAGGAGAGATTCAAATCTAGGCAGCTTGAAAAATCTACTCCTAGCCTT
AGCCACCATAATATTCTGTCTCTGGCAAAAAAAAAAGAGAGTAGCCTGCC
CCTTTCAATGCTCTTAACCCAGTGTTTCCCAGCCAATCACCCGAGACCTT
TCAAGGCACTTGAGCATCTCCAGGGATGTTCTAAGAGTCTCTTCAAGGGC
TTTAATATTCTTTGTTCAGGCTCGGTGTAAATGACATTTCAGGTTTAGCT
GGAATAGAGTGTTTCATGTCTGATACACCACCACATGGTCTTCATGAATT
AGAACCAGTGAATTAGAACCATGGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_i03.g1 MSMg01no267_i03.g1 CHROMAT_FILE:
MSMg01no267_i03.g1 PHD_FILE: MSMg01no267_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:36 2005
         (653 letters)



>mm_chr10_98257581_98258634
          Length = 1054

 Score = 1176 bits (608), Expect = 0.0
 Identities = 643/656 (98%), Gaps = 5/656 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctaaactagggccaccaaggtcctttttgtatgcctaatgaaatgaccccattggag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 atgctaaactagggccaccaaggtcctttttgtatgcctaatgaaatgaggccattggag 260

                                                                       
Query: 61  aactttcttttattcccagcaagcacaacagaaaaggggcataaggagtaaagagttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttcttttattcccagcaagcacaacagaaaaggggcataaggagtaaagagttaga 320

                                                                       
Query: 121 ctgtatatagtgttttgaattactgactgtatgagtacaggaagtattttagattttaaa 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtatatagtgttttgagttactgactgtatgagtacaggaagtattttagattttaaa 380

                                                                       
Query: 181 ctgctttactggcagaaactgtatgtcagacaatatgcactcgcttcataaataggaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctttactggcagaaactgtatgtcagacaatatgcactcgcttcataaataggaaca 440

                                                                       
Query: 241 gagtgatactgtccaagtttgcaaatgagtataaactgaaatttttttttaaaaaaa--g 298
           ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |
Sbjct: 441 gagtgatactgtccaagtttgcaaatgagtataaactgaa--ttttttttaaaaaaaaag 498

                                                                       
Query: 299 actattttccccaaccaatggcacaggtaaaggagagattcaaatctaggcagcttgaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 actattttccccaaccaatggcacaggtaaaggagagattcaaatctaggcagcttgaaa 558

                                                                       
Query: 359 aatctactcctagccttagccaccataatattctgtctctggcaaaaaaaaaa-gagagt 417
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 559 aatctactcctagccttagccaccataatattctgtctctagcaaaaaaaaaaagagagt 618

                                                                       
Query: 418 agcctgcccctttcaatgctcttaacccagtgtttcccagccaatcacccgagacctttc 477
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 agcctgcccctttcaatgctcttaacccagtgtttcccagccaatcacccaagacctttc 678

                                                                       
Query: 478 aaggcacttgagcatctccagggatgttctaagagtctcttcaagggctttaatattctt 537
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 679 aaggcacttgagcatctccagggatgttctcagagtctcttcaagggctttaatattctt 738

                                                                       
Query: 538 tgttcaggctcggtgtaaatgacatttcaggtttagctggaatagagtgtttcatgtctg 597
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 739 tgttcagcctcggtgtaaatgacatttcaggtttaactggaatagagtgtttcatgtctg 798

                                                                   
Query: 598 atacaccaccacatggtcttcatgaattagaaccagtgaattagaaccatggttat 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atacaccaccacatggtcttcatgaattagaaccagtgaattagaaccatggttat 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space:   671292
Effective search space used:   671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)