BAC Information

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BAC

Clone NameMSMg01-267J11
Chromosome10 (Build37)
Map Location 87,025,880 - 87,205,555
singlet/doubletdoublet
Overlap genePah, LOC100041517
Upstream geneLOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik, Ascl1
Downstream geneENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267J11.T7 (MSMg01no267_j11.b1)MSMg01-267J11.TJ (MSMg01no267_j11.g1)
ACCAG408267AG408268
length723722
length of high quality
(start - end)
317 (45 - 361)287 (436 - 722)
definitionCHROMAT_FILE: MSMg01no267_j11.b1 PHD_FILE: MSMg01no267_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:42 2005CHROMAT_FILE: MSMg01no267_j11.g1 PHD_FILE: MSMg01no267_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,205,246 - 87,205,555)(87,025,880 - 87,026,166)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAATGTATAGCATTCAGGTACATGCGAGGCTGCCCCCAAACTGG
GGGAGTTTGTTTATCTCTGTTGTTCTCCACTGGTTCATGTTAACTGGATC
TTTCTAATGTACAATGCTGGGGAGACAAACTGAGTTATGGGTGTATAGTA
TGAAAATATGTGAATTGTGTCTGAATTTCTGTAAAAATAAACCAAATGCA
ATGAATTTCATCAAGGATTATATTAGTCATAGATCCTAGTGATGGCTAAA
TTTTTATGTCAACGGAATTCTGTCTTCAGAATCGATAAAGTATCATTTTA
TGGCATGTTTGNGTGGGCCCCNTANCCANNNCCCTATCTATCTATCTATC
TATCTATCTATCTATCCACCCATAAAACAGACAGACTGTCTGTCTGTCTT
CTATCCCTCCATTCCTCTGTCCCTCCCTCCCTCCCTTTCTCCTTCCTTTC
TTCCTTCCTTGATCTCCTATGTTCCATCCTGGCCTTGATCTTTCTATATC
ACTGAACGTACTCTATGTAGCTCCTTTATAATATTTTTATTCATGAAACT
GGCATACCAGTCTCAGTGAATAAGCGTATGATAATCTTCCCTCATTGTGA
GATGTTACTGCCATTTGCTTGGATATACAATACTGATTATATCTTATCTG
GACCGGATTATATTGTATTTTCT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATGTTCCCAACTTCTATCCCC
CAAAATGTACATACATCCCAGCACCTACACGCACACACACACACACAAAC
ATACACACACACACATATATAAGCACATAAACATACATATACTCACATAC
ACACATACATGCACACACATATAAATGCACATATACACACAAACATACAT
AAATACACATGCATACATATACATAGAGACATACATACACACACAGACAC
ACATACATGAGGAAGCATTACTAAACACAACACTTGCCAGAAATTGTGTG
AATAATCTATCCNCTCATCACCCGCCCCCGCGCGAATAATCTATGCCTTC
ATCGCAGGCATCTGATTTGGCTTGATCAAGATAATTTAGAAGGCAGGAAT
GGAGTAGATGACATTTCTTATGACTAGAGTATATGTGTAGATACTGAAAT
TTCAGAAAGGAGATTTCCCTGATTTGAAGGCTTGGTAGAATGTGTCACTC
ACTCCTTCTGGGTTTAACAGAGACCTTATTTTAGAGCATCATCAAGGAGA
CACGTGTCATCATAGCTCAAAAACTTCCACTCAGATCATCGCTGGAGGTG
CCAGGCCTCTCCCTCTGCAGACTTGAGTCATCAAGTGTCTTCTCTTTCTT
AGGGCTTTAAAGATCCTGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_j11.b1 MSMg01no267_j11.b1 CHROMAT_FILE:
MSMg01no267_j11.b1 PHD_FILE: MSMg01no267_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:42 2005
         (317 letters)



>mm_chr10_87205039_87205755
          Length = 717

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcagtaatgtatagcattcaggtacatgcgaggctgcccccaaactgggggagtttgtt 67
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 517 ttcagtaatgtatagcattcaggtacatgcgaggctgcccccaacctgggggagtttgtt 458

                                                                       
Query: 68  tatctctgttgttctccactggttcatgttaactggatctttctaatgtacaatgctggg 127
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 457 tatctctgttgttctccactggttcatattaactggatctttctaatgtacaatgctggg 398

                                                                       
Query: 128 gagacaaactgagttatgggtgtatagtatgaaaatatgtgaattgtgtctgaatttctg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagacaaactgagttatgggtgtatagtatgaaaatatgtgaattgtgtctgaatttctg 338

                                                                       
Query: 188 taaaaataaaccaaatgcaatgaatttcatcaaggattatattagtcatagatcctagtg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taaaaataaaccaaatgcaatgaatttcatcaaggattatattagtcatagatcctagtg 278

                                                                       
Query: 248 atggctaaatttttatgtcaacggaattctgtcttcagaatcgataaagtatcattttat 307
           ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 277 atggctaaatttttatgtcaatggaattctgtctacagaatcgataaagtatcattttat 218

                     
Query: 308 ggcatgtttg 317
           ||||||||||
Sbjct: 217 ggcatgtttg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no267_j11.g1 MSMg01no267_j11.g1 CHROMAT_FILE:
MSMg01no267_j11.g1 PHD_FILE: MSMg01no267_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:42 2005
         (287 letters)



>mm_chr10_87025680_87026366
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaaggcaggaatggagtagatgacatttcttatgactagagtatatgtgtagatact 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaagccaggaatggagtagatgacatttcttatgactagagtatatgtgtagatact 260

                                                                       
Query: 61  gaaatttcagaaaggagatttccctgatttgaaggcttggtagaatgtgtcactcactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatttcagaaaggagatttccctgatttgaaggcttggtagaatgtgtcactcactcc 320

                                                                       
Query: 121 ttctgggtttaacagagaccttattttagagcatcatcaaggagacacgtgtcatcatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgggtttaacagagaccttattttagagcatcatcaaggagacacgtgtcatcatag 380

                                                                       
Query: 181 ctcaaaaacttccactcagatcatcgctggaggtgccaggcctctccctctgcagacttg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaaaacttccactcagatcattgctggaggtgccaggcctctccctctgcagacttg 440

                                                          
Query: 241 agtcatcaagtgtcttctctttcttagggctttaaagatcctgtgta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcatcaagtgtcttctctttcttagggctttaaagatcctgtgta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)