BAC Information

Click to search

BAC

Clone NameMSMg01-267O15
Chromosome10 (Build37)
Map Location 10,934,298 - 11,085,631
singlet/doubletdoublet
Overlap geneShprh, Fbxo30, Epm2a
Upstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
Downstream geneEG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267O15.T7 (MSMg01no267_o15.b1)MSMg01-267O15.TJ (MSMg01no267_o15.g1)
ACCAG408501AG408502
length757736
length of high quality
(start - end)		320 (46 - 365)661 (76 - 736)
definitionCHROMAT_FILE: MSMg01no267_o15.b1 PHD_FILE: MSMg01no267_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:05 2005CHROMAT_FILE: MSMg01no267_o15.g1 PHD_FILE: MSMg01no267_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,085,318 - 11,085,631)(10,934,298 - 10,934,958)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCAATAGCCTAAGTAAGCCCTGAGTTTATGATTCACTTGTATC
AGGCCCCTGAGTATCTGGGGACAGCAGCCTATGCCACTGGTCCCAGACAA
ACCATCATTTCTTGTAAACTACCTCTTCTATGGGTAGCCTGCCTTCACGC
AACATTCTCATGCCCCCTCCCCACATTACTCTTCACTACACCATATCCCA
CTTGTCCTCAGCACTCCACTGCAGACTTTAAATGAAGTCATCTCCTAACT
CCGGCATTAATGTTTCATCTTTCCTTACCTGCCTGCAATATTTAAAGCCA
AGACATCCTCTGANGATGCCTTCCCCACTCACCCCTCTGTTGTCCTGGAA
GACCTCAAGTTCATGACCTCAGACTTCACTCAAAAACATACTATCATCCC
TGTGGGTCCAGGAATGCTTATGCTCTCACATAAAGTGGTACAGCATTTGC
ATATAACATATGCATCCCCTCTATTCTTCAAGTCATCTCTAGGTCACTTA
CACTACTCAACATGATCTTAAGGTAGCATAAATAGCTGCAGCACCTTATC
ATTTAAAAACTAATAACAAGAGAAAAGTCTGTATGCATTGAGTACAGATG
CAATTTTTCTGATTCAGACATTTCTGACTTAGTGTTGGTTGGTGGACTCC
AGATATGGAATCTAACAATACAAAAGGCTGAGTGTCTTGTTTACTCTTCC
CACACAG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGATGACTTTGAAATTACAAAAT
AAGAAGTAGCTTGTTGTATCCTACCCTTGTGTTGGAATATAAATGTTCTT
GTTTCCTTCCCTTTAGCTGTTGAAATCAAGGGACCCTCAAGGTTCATTAG
CTCCTACCTAACTGTCCATAAAACTGTACTAGAAGTAGTTCCTGGGTCTC
CTTTATCCCGTGAGCTCTGGTGCTTAAGCTAAGGTGCATTTTCTTATCCA
GGTTTATAGGTGACAGGTCAGCTGAAGAAGACACGTTTTTTGGGTGCTTA
TTCTTTAGTTGAAGGGAGATATACATTGATTCTTTTATATGAAATTAAAC
ATAATATTTTTACAGCTCTTTTACATTCACTAAGAGCTTTTCTGTGTATT
CATGTGGTTAATATTCACAACAGTCCTGTGAAATGGATATGATTAATGAT
ATTCCTATTTTGAAGGTAAAGATCTAATGCTCAGGAGGAAACTCGCCTAT
GATATGTAGCAAACAGACAGAGCAGTCCAGGCCCCCTGGCTTCATGTCTA
CTGTTCTTCCACCAAGTTGTGTGCCATGCTGGGGTTCAGAAGCCTTGTGG
GTATGACTTAGAATGGGATTGTGTAAGTACTTATTTTTGTTTCCTAATAT
TTCATGTGCTATGTTCTAGGAAAAACAATTTGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_o15.b1 MSMg01no267_o15.b1 CHROMAT_FILE:
MSMg01no267_o15.b1 PHD_FILE: MSMg01no267_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:05 2005
         (320 letters)



>mm_chr10_11085114_11085833
          Length = 720

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcaatagcctaagtaagccctgagtttatgattcacttgtatcaggcccctg 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 518 gaattcattcaatagcctaagtaagccctgagtttatgatccacttgtatcaggcccctg 459

                                                                       
Query: 65  agtatctggggacagcagcctatgccactggtcccagacaaaccatcatttcttgtaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agtatctggggacagcagcctatgccactggtcccagacaaaccatcatttcttgtaaac 399

                                                                       
Query: 125 tacctcttctatgggtagcctgccttcacgcaacattctcatgccccctccccacattac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tacctcttctatgggtagcctgccttcacgcaacattctcatgccccctccccacattac 339

                                                                       
Query: 185 tcttcactacaccatatcccacttgtcctcagcactccactgcagactttaaatgaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcttcactacaccatatcccacttgtcctcagcactccactgcagactttaaatgaagtc 279

                                                                       
Query: 245 atctcctaactccggcattaatgtttcatctttccttacctgcctgcaatatttaaagcc 304
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atctcctaactgtggcattaatgtttcatctttccttacctgcctgcaatatttaaagcc 219

                         
Query: 305 aagacatcctctga 318
           ||||||||||||||
Sbjct: 218 aagacatcctctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_o15.g1 MSMg01no267_o15.g1 CHROMAT_FILE:
MSMg01no267_o15.g1 PHD_FILE: MSMg01no267_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:05 2005
         (661 letters)



>mm_chr10_10934098_10935158
          Length = 1061

 Score = 1263 bits (653), Expect = 0.0
 Identities = 659/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgactttgaaattacaaaataagaagtagcttgttgtatcctacccttgtgttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atggatgactttgaaattacaaaataagaagtagcttgttgtatcctagccttgtgttgg 260

                                                                       
Query: 61  aatataaatgttcttgtttccttccctttagctgttgaaatcaagggaccctcaaggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatataaatgttcttgtttccttccctttagctgttgaaatcaagggaccctcaaggttc 320

                                                                       
Query: 121 attagctcctacctaactgtccataaaactgtactagaagtagttcctgggtctccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attagctcctacctaactgtccataaaactgtactagaagtagttcctgggtctccttta 380

                                                                       
Query: 181 tcccgtgagctctggtgcttaagctaaggtgcattttcttatccaggtttataggtgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccgtgagctctggtgcttaagctaaggtgcattttcttatccaggtttataggtgaca 440

                                                                       
Query: 241 ggtcagctgaagaagacacgttttttgggtgcttattctttagttgaagggagatataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcagctgaagaagacacgttttttgggtgcttattctttagttgaagggagatataca 500

                                                                       
Query: 301 ttgattcttttatatgaaattaaacataatatttttacagctcttttacattcactaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgattcttttatatgaaattaaacataatatttttacagctcttttacattcactaaga 560

                                                                       
Query: 361 gcttttctgtgtattcatgtggttaatattcacaacagtcctgtgaaatggatatgatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttctgtgtattcatgtggttaatattcacaacagtcctgtgaaatggatatgatta 620

                                                                       
Query: 421 atgatattcctattttgaaggtaaagatctaatgctcaggaggaaactcgcctatgatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgatattcctattttgaaggtaaagatctaatgctcaggaggaaactcgcctatgatat 680

                                                                       
Query: 481 gtagcaaacagacagagcagtccaggccccctggcttcatgtctactgttcttccaccaa 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 gtagcaaacagacagagcagtccaggccccctggcttcatgtctactgttcttccaccga 740

                                                                       
Query: 541 gttgtgtgccatgctggggttcagaagccttgtgggtatgacttagaatgggattgtgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttgtgtgccatgctggggttcagaagccttgtgggtatgacttagaatgggattgtgta 800

                                                                       
Query: 601 agtacttatttttgtttcctaatatttcatgtgctatgttctaggaaaaacaatttgata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtacttatttttgtttcctaatatttcatgtgctatgttctaggaaaaacaatttgata 860

            
Query: 661 t 661
           |
Sbjct: 861 t 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |