BAC Information

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BAC

Clone NameMSMg01-268F21
Chromosome10 (Build37)
Map Location 87,589,017 - 87,739,749
singlet/doubletdoublet
Overlap gene4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch
Downstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268F21.T7 (MSMg01no268_f21.b1)MSMg01-268F21.TJ (MSMg01no268_f21.g1)
ACCAG408818AG408819
length742727
length of high quality
(start - end)		315 (46 - 360)239 (126 - 364)
definitionCHROMAT_FILE: MSMg01no268_f21.b1 PHD_FILE: MSMg01no268_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:38 2005CHROMAT_FILE: MSMg01no268_f21.g1 PHD_FILE: MSMg01no268_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,589,017 - 87,589,327)(87,739,511 - 87,739,749)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAGCAGGCTCAAATATGAAAAGAAAATTTTCTTTACCAATACC
CGTACCTGTACAGAAAAGTATTCGTTATTTCTTTATTGCAGTTGTTCTAG
ACCTTTTTCTTAGATATATATGCAGAAACAGCATATAGACTCATGTAATC
ACAACACTGCATCCCATTCTTTAGGCAAAAGGAACAGCTAGACAAACTGG
AAACAAATTGGACAGTTAATATGTTCTTTCTTACTGACTGAACTTAATAA
CAAGCAAATACTAACTACAGTGGCTACTGGAAACCAACCCTTACAAAGTG
ATATAGAAGGATATCTCTTAACAACCCCCCCTCCGCCGAGATTTCACCCT
CTTTCCCTGTATAAGCCTGCCAGGAAATAATAAACAAGGACACAGTCTTA
GAACCTTACAGCAGGAGCCATCTTGCCACTGGACCCAAGTCTACATCCTA
TTGTGATGCCAGGCACAGAGCTACAGTTAAATGCTTAAGTTTTTGAGAGC
TATTAGATAATGACTTTGACATAATGAAATAACCAAATATCAAAATGAAT
GAAATAAATGTTTAGAAAACAATGAAATTTAGTGAGTATTGATATTAACT
GACTTCTGGGAGCATTAACAAATTTACCAAGAATTATGTAACTCATATAA
AAAGATATTAAGCATATGAAATAATCTTAAGAGTTTCTGCAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTAGCATGGTGTCCAAAACTAGGGT
GCACCTCGTGACCATTCTTTTAACACAGAGGGATGAGGCACACACAGACA
CACACCCGACCAGTTGGCTGGGTTAAAAGGACAGACAATTAGCATGGAAA
TAGGTAAGTATGAAAGTGGGAAATCATGCTGGGCTGGAATGAAAACAGCA
GGTCGCTAACTTTCCTTAATCATGCCTTCCTTTTAAGACCTTTCTCATTT
ACAACCTAATAAGGATGCCAGATCCAGATGTTCAACAAACATGTAATCGT
CACCAAAAAAGGCTTATAGAAGAGAGGTGTCCATTGCTCTTGAAGAAATA
CTGCTATATTAGGTAAAAACCCAGAGCAGGCACTGGCTCACACACACATT
GGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNTNNNTN
NNNTNNNNNTNNNNNNNTNNNNNNTNNTTTTTTTTTNTTTTTTTTTTTTN
TTTTNNTTTTTTTTTTNNNTTTTTAATTNTTTTNTTNTTTTTNTTTTTTA
TTTTTTTTNTTNTTTTTTTTTTTTNTTNTTTTTTTTTTTTNTNTTTTTTT
NTTTTTTTATTTTTTTTTTNTTTTTTTTTTTATNTTNTTTTTNTNTTTTT
TNTNNNTTTTTNTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_f21.b1 MSMg01no268_f21.b1 CHROMAT_FILE:
MSMg01no268_f21.b1 PHD_FILE: MSMg01no268_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:38 2005
         (315 letters)



>mm_chr10_87588813_87589527
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagcaggctcaaatatgaaaagaaaattttctttaccaatacccgtacctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagcaggctcaaatatgaaaagaaaattttctttaccaatacccgtacctgt 264

                                                                       
Query: 65  acagaaaagtattcgttatttctttattgcagttgttctagacctttttcttagatatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagaaaagtattcgttatttctttattgcagttgttctagacctttttcttagatatat 324

                                                                       
Query: 125 atgcagaaacagcatatagactcatgtaatcacaacactgcatcccattctttaggcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcagaaacagcatatagactcatgtaatcacaacactgcatcccattctttaggcaaa 384

                                                                       
Query: 185 aggaacagctagacaaactggaaacaaattggacagttaatatgttctttcttactgact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggaacagctagacaaactggaaacaaattggacagttaatatgttctttcttactgact 444

                                                                       
Query: 245 gaacttaataacaagcaaatactaactacagtggctactggaaaccaacccttacaaagt 304
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 445 gaacttaataacaagcaaatactaactacagtggctactggaaactgacccttacaaagt 504

                      
Query: 305 gatatagaagg 315
           |||||| ||||
Sbjct: 505 gatataaaagg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_f21.g1 MSMg01no268_f21.g1 CHROMAT_FILE:
MSMg01no268_f21.g1 PHD_FILE: MSMg01no268_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:38 2005
         (239 letters)



>mm_chr10_87739311_87739949
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagggatgaggcacacacagacacacacccgaccagttggctgggttaaaaggacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagagggatgaggcacacacagacacacacccgaccagttggctgggttaaaaggacaga 380

                                                                       
Query: 61  caattagcatggaaataggtaagtatgaaagtgggaaatcatgctgggctggaatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caattagcatggaaataggtaagtatgaaagtgggaaatcatgctgggctggaatgaaaa 320

                                                                       
Query: 121 cagcaggtcgctaactttccttaatcatgccttccttttaagacctttctcatttacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagcaggtcgctaactttccttaatcatgccttccttttaagacctttctcatttacaac 260

                                                                      
Query: 181 ctaataaggatgccagatccagatgttcaacaaacatgtaatcgtcaccaaaaaaggct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctaataaggatgccagatccagatgttcaacaaacatgtaatcgtcaccaaaaaaggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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