BAC Information

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BAC

Clone NameMSMg01-268I13
Chromosome10 (Build37)
Map Location 57,166,241 - 57,166,541
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268I13.T7 (MSMg01no268_i13.b1)MSMg01-268I13.TJ (MSMg01no268_i13.g1)
ACCAG408922AG408923
length710713
length of high quality
(start - end)
317 (45 - 361)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no268_i13.b1 PHD_FILE: MSMg01no268_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:50 2005CHROMAT_FILE: MSMg01no268_i13.g1 PHD_FILE: MSMg01no268_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTCGGTGGCGGGGGGGGGGCGGACTATAAGGAAAGCTAAGAATT
CTTATGCAGTATTTTCAATCATGAATATAATAGAAATGCTGAATATATAC
TGTACATGTACGGACATGTTTTAAATGTTTTAAGTCCAAGGAAGTTTTGG
GATGCTCTGGAGTTTTGTTTTTATAAATTACTATTATCATTCCTGTGGTT
TAAAGGAAGAAACTAAGACTTAGTGGGTACATATTACACAAGAGAAATGA
AGACAAAACTAGGCCTAGGGTTTCCCTGAGTGGAGAATCCTAAACACTTT
TATGTATTTACTTATTATACCTACCCCGCCTATATACAAACTCTGAAGGT
CTCAATTTTTACAATATTCCCCAATTAACTATGTGTGTAAGAGGTATATG
CATGTGAGTATGGATGACCTAGAGGCCAAAAGTGCCAGATACCCTGATAT
TGGAGTTGTAAGCAGCCATGAATAGAGTAGTATTAGGTGCTAGAAACCAA
AATAGGGTCCTCTACAAGAGCAATACTGTTCTTAAACACTGAGTCATCTT
TCTACCCTTATCCCTTTTCCAGCGAATGTTTTCTGATGGATACTATCAGG
AGCTTTAAAATACTTCAGGATGCACACACCCCCACACACACATAAATCCA
CACACACATC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATACA
AATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGTGAGAATGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTAGCGGTTCCTCAGAAAACTGGACATAGTACTACTGGAGGATC
CCGCAATACCTCTTTTGGGCACATCCCCCCACGATGTCCCAACCGGTAAG
AAGAACACATGCTCCACTACCCCCACAACACCCTCATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTAAACAATGGAATACTACTCAGCTATTAAAAAAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGT
GAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAG
TGGATATTAGCCCAGATATTTACGATACCTAAGAATCAATATACCTCTTG
CCATACGGATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_i13.b1 MSMg01no268_i13.b1 CHROMAT_FILE:
MSMg01no268_i13.b1 PHD_FILE: MSMg01no268_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:50 2005
         (317 letters)



>mm_chr10_57166025_57166741
          Length = 717

 Score =  464 bits (240), Expect = e-135
 Identities = 278/302 (92%), Gaps = 20/302 (6%)
 Strand = Plus / Plus

                                                                       
Query: 35  actataaggaaagctaagaattcttatgcagtattttcaatcatgaatataatagaaatg 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 actataaggaaagctaagaattcttatgcagtattttcaatcatgaatataatagaaatg 276

                                                                       
Query: 95  ctgaatatatactgtacatgtacggacatgttttaaatgtttt----------------- 137
           |||||||||||||||||||||| ||||||||||||||||||||                 
Sbjct: 277 ctgaatatatactgtacatgtaaggacatgttttaaatgtttttacacagtccattcctt 336

                                                                       
Query: 138 -aagtccaaggaagttttgggatgctctggagttttgtttttataaattactattatcat 196
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 taagtccaaggaagttttgggatgctctggagttttgtttttataaattactattatcat 396

                                                                       
Query: 197 tcctgtggtttaaaggaagaaactaag-acttagtgggtacatattacacaagagaaatg 255
           ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 397 tcctgtggtttaaaggaagaaactaagga-ttagtggatacatattacacaagagaaatg 455

                                                                       
Query: 256 aagacaaaactaggcctagggtttccctgagtggagaatcctaaacacttttatgtattt 315
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 456 aagacaaaactaggcctagggtttccctgagttgagaatcctaaacacttttatgcattt 515

             
Query: 316 ac 317
           ||
Sbjct: 516 ac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)