BAC Information

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BAC

Clone NameMSMg01-268J03
Chromosome10 (Build37)
Map Location 122,684,578 - 122,684,757
singlet/doubletsinglet
Overlap genenone
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream geneAI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J03.T7 (MSMg01no268_j03.b1)MSMg01-268J03.TJ (MSMg01no268_j03.g1)
ACCAG408950AG408951
length726724
length of high quality
(start - end)
185 (45 - 229)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no268_j03.b1 PHD_FILE: MSMg01no268_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:52 2005CHROMAT_FILE: MSMg01no268_j03.g1 PHD_FILE: MSMg01no268_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGGAAATGATTTTCTTTTTGGTAATATTGGTAATATCCCAATAGT
TTATCTGGTTAACAACTATACAATAATTCTGCCCTAGATTTTCTCTTTGC
AAAACTTCCTAAATATTTTCAGTTTCATATCACACTGTGTCTCATCCAGT
GACCACTGAACTTAAAGCAGATATCCCAGGCCTGTAGCTTACCCTGTGAA
AGCCCTCCCCATAGAAGAGGAAGATTCCAAGTCATGCTTTAAAGGTCTGT
TTATTGCGCTAACCTATGCAACGAAGTTGCAGATGCTGTGCTAAACAAGG
GCACCGTTTGTGTGTTTGTTACACCACCCCCCCTCAAAACCAATTAGGTT
ATAGTTTCATTGAATCATTTTAAGCTCATAGAACAGATTCAAATATTTAC
TTCCGGTCTCGGATGAAGAACATTTCCTTTAGGAAATACCTCCGAAAACA
AATGCGTGACCTGAGAGTGCCTGAGAGCGCCACCTCAACAGTCCTCGGAA
CTTTACTATGGAAATTCCCCTTGAGCATGACAGGATAGCTCCCTGCCCTT
GGCGGACAGAAGTTCAAGTTCATGCTGATTTCCTCTAAATAGATTAGATT
TAAAAATTTGTGACTGCTGTATGTAAATATTCTCTAACCTTTCCCCATAT
TACTCTGTTCCCTTANAACACTTAGG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTGCAGACATGAATGGCAGCC
TACATTACATAATAGTAGAAAGAAGGTGGGTTGTGGTTTAAGGAGGAACT
AAAGTACTGTATTATTTATGGAAGGATTAGTAGAATGGAACTCCCCTGGT
ACATGTTTTTTCACTAGGCCCAGAGGAATAGCATAATTAGGTATTTACTA
AAGGACCCCTGGTGGTGGGTTTAACAATAGACTAGTATTGCACCTGGGCG
TGTCAGCCCTTACACCTGGCTCCTGTGAATAGCTGATAGATAGGGCTGTT
CCTATTTCAGTTGTAATTTTTGCCTGCCTCCTGCTACCTTTTATGTATGT
ATTTTCTCTGTTTTGTGTAAGGAACCATTATGCATCTTGATGTACCTTGG
CTAATGGATCAAGTAGCTTTCTTGTTTTTCTTCTGTATTATAAGTCTGAT
GATCGTTTTGAGAAATTACATTAAGATCAACACTCCCTTGTGTTTGCGTC
TGTTTGTCATTTTTTTGCCGACTCCTTGCCCACCTGCATACAGGGACCTT
GATTCTCCTGCACGTTGACAGACCAACTGAGTTCAGTTCGCAACAGTCTC
CCACTCTCAGCACTCCCGGGTTGCCTGTCCTTCTTTGTCCGTAGGTAGTA
CCATGACGGATATCCCGCTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j03.b1 MSMg01no268_j03.b1 CHROMAT_FILE:
MSMg01no268_j03.b1 PHD_FILE: MSMg01no268_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:52 2005
         (185 letters)



>mm_chr10_122684374_122684959
          Length = 586

 Score =  302 bits (156), Expect = 1e-86
 Identities = 175/182 (96%), Gaps = 3/182 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggaaatgattttctttttggtaatattggtaatatcccaatagtttatctgg 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctaggaaatgattttctttttggtaatattggtaatatcccaacagtttatctgg 264

                                                                       
Query: 65  ttaacaactatacaataattctgccctagatttt-ctctttgcaaaacttcctaaatatt 123
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 265 ttaacaactatacaataattctgccctagatttttctctttgcaaaacttcctaaatact 324

                                                                       
Query: 124 ttcagtttcatatcacactgtgtctcatccagtgaccactgaacttaaagcagatatccc 183
           |||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||
Sbjct: 325 ttcagtttcatatcacactgtgtctcatccagtggccactggacttaaagcagat--ccc 382

             
Query: 184 ag 185
           ||
Sbjct: 383 ag 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 586
Length adjustment: 8
Effective length of query: 177
Effective length of database: 578
Effective search space:   102306
Effective search space used:   102306
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)