BAC Information

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BAC

Clone NameMSMg01-269B08
Chromosome10 (Build37)
Map Location 45,799,024 - 45,799,633
singlet/doubletsinglet
Overlap genenone
Upstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269B08.T7 (MSMg01no269_b08.b1)MSMg01-269B08.TJ (MSMg01no269_b08.g1)
ACCAG409312AG409313
length740746
length of high quality
(start - end)
651 (41 - 691)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no269_b08.b1 PHD_FILE: MSMg01no269_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:28 2005CHROMAT_FILE: MSMg01no269_b08.g1 PHD_FILE: MSMg01no269_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAATAGTTGTCATCATAAGAGGTTCTTCGGAGCAATCATTATTGAAGGAC
ATTCTGTGCTTCCATTATGAAAAAGTCCATCTATGACAATAGTAAGAATT
GAAGCCACTCATCCAGGAGATTCAGTAGCATTTTGGCCAAACAGCATTTG
CAGTAGTTGGGAGCCAAGGATTTTCCTCTTAGGAGCAAGGCAGAGCATCT
AAGCCGCCAGTCATCATTCTAGCCTTTCTTCTCTGTCTGGCTGTAGGTCC
TTCAAGTGCTCACAGCAATCAGATACCTCCCAACTCCTCTTACCAAACTC
TACCCACCCAGATTTGAGAGGAGGGAAGAGGGAAGAATCTATTTTATATA
TGCTTCTTCTGGAATATTCTATGCAAAGATTCTTTTTAATTCGGCTTTTT
TTTTTTTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGACTGTTCTGGA
ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCTGTT
AATTCAGCTTTTTAAATTCAAAAAAGTAAAATTCTAAACTGCAGGCACTT
GTGCCAGCTACTCACTTCATTAATTTCTACTTTCATCTGCACAATATCAG
AATCCTAATATTTCTTTTGACCTTTTATAATATCTCACTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGCCTCAAAAGAAACTGTCTCTGGGAC
CATGCAGATGGTCAATCTGACAGTGGAGAATGAAGGGGCTTACCAGATCT
GAGCTAACAAGCATGGTTGTGGCTGGGATGGGATGCAAACCTGCAGTTTC
TGGATCTGAGTCACAGTGTACCAATGTTGTGATTATAAAAGATAAAGAGA
TACTAATAGGTGTTCTAACTAGGTGTGGGGGAAGGGAGTGAGATCAACCA
CACATGACAGTATAGTATAGAATAGAGTTTTTTTAGGGCATGGGGAGGGG
AGTTAAGAGAGTAGTATAGTCAGGCAAAGGCAGAGAGAAGGAGAGAGTAG
AGAAGCAGATGCTGTCCCTGACCAATTGAAGAGAGGGTAAAAGGGAATGG
GGAGAAAGGCGGAGCAAGGGTGTAAGAGGCAAGAGAGTAAGAAAACAAGA
GAGGTGAGAGAGCAAGAGAGTGAGAGAGGATGCAGCCAAGCAGCCAGGCC
TACCTGGTTATTGCCAGGTAACTGTGGGAGGAGCATACCTGTCTGTTGCT
AACTACCTGCGGTGTTGGAGCCCTTTCCGAATTCCCTTCTTTTAGCATTA
ATTCAGTGATATCTAATTTACTTCCTTGTTCTCCAGACAGGTCTTGCTCT
ACATACGCAGACTTTTGTTTTTACTACTCTCTTTGACTTTCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_b08.b1 MSMg01no269_b08.b1 CHROMAT_FILE:
MSMg01no269_b08.b1 PHD_FILE: MSMg01no269_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:28 2005
         (651 letters)



>mm_chr10_45799024_45800074
          Length = 1051

 Score = 1141 bits (590), Expect = 0.0
 Identities = 602/610 (98%), Gaps = 7/610 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatagttgtcatcataagaggttcttcggagcaatcattattgaaggacattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattcaaatagttgtcatcataagaggttcttcggagcaatcattattgaaggacattc 551

                                                                       
Query: 65  tgtgcttccattatgaaaaagtccatctatgacaatagtaagaattgaagccactcatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgtgcttccattatgaaaaagtccatctatgacaatagtaagaattgaagccactcatcc 491

                                                                       
Query: 125 aggagattcagtagcattttggccaaacagcatttgcagtagttgggagccaaggatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aggagattcagtagcattttggccaaacagcatttgcagtagttgggagccaaggatttt 431

                                                                       
Query: 185 cctcttaggagcaaggcagagcatctaagccgccagtcatcattctagcctttcttctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cctcttaggagcaaggcagagcatctaagccgccagtcatcattctagcctttcttctct 371

                                                                       
Query: 245 gtctggctgtaggtccttcaagtgctcacagcaatcagatacctcccaactcctcttacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtctggctgtaggtccttcaagtgctcacagcaatcagatacctcccaactcctcttacc 311

                                                                       
Query: 305 aaactctacccacccagatttgagaggagggaagagggaagaatctattttatatatgct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaactctacccacccagatttgagaggagggaagagggaagaatctattttatatatgct 251

                                                                       
Query: 365 tcttctggaatattctatgcaaagattctttttaattcggc-------tttttttttttt 417
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 250 tcttctggaatattctatgcaaagattctttttaattcggcttttttttttttttttttt 191

                                                                       
Query: 418 tttccgagacagggtttctctgtatagccctgactgttctggaactcactttgtagacca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttccgagacagggtttctctgtatagccctgactgttctggaactcactttgtagacca 131

                                                                       
Query: 478 ggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggc 537
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 130 ggctggcctcgaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggc 71

                                                                       
Query: 538 gtgtgccaccacgcccggctgttaattcagctttttaaattcaaaaaagtaaaattctaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gtgtgccaccacgcccggctgttaattcagctttttaaattcaaaaaagtaaaattctaa 11

                     
Query: 598 actgcaggca 607
           ||||||||||
Sbjct: 10  actgcaggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)