BAC Information

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BAC

Clone NameMSMg01-269I22
Chromosome10 (Build37)
Map Location 12,425,899 - 12,426,113
singlet/doubletsinglet
Overlap geneUtrn
Upstream genenone
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269I22.T7 (MSMg01no269_i22.b1)MSMg01-269I22.TJ (MSMg01no269_i22.g1)
ACCAG409641AG409642
length731750
length of high quality
(start - end)		320 (41 - 360)217 (72 - 288)
definitionCHROMAT_FILE: MSMg01no269_i22.b1 PHD_FILE: MSMg01no269_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:03 2005CHROMAT_FILE: MSMg01no269_i22.g1 PHD_FILE: MSMg01no269_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTATGTAGACCAAGCTAGCTTTAAACTCACAGAGATCCACCTGCCTCTA
CCTCCTGAGCTCTGGTGTTAAAGACATGTGCCACCATACCTAGACTTTAC
ATTTTAAAGTAGGCCTATGGGAATTTCATACAATATATTATGGTCATATT
CTCCCCCTTCTTAAACATCTCTCAGATCTACTCTTCCTTCCCTACTCACA
CAAATTTGCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTAACCGAATCCA
GTTTGTATTTCCATATACTCTTGAGTGGCTATCCACTGGGTGGCCTGGTT
AACCTTCCATTTTTTTTTTTGAACCCCCCCGGCTCCCATGGGCTCTGTGT
TTGAATACAGGGCCCCTCGCTGATGGACCTGCTTGGGAAGAACCAGGAAC
TTTTGCCCTTGTTGGAGGAGTTGGACCACTGTGGGTGAACTTTAGGGTTT
CGAAAGTCTCAGCCCAATACCAGTATTCCTCTCTCTGTTTCCTGCTTTTG
GATCAAGATACGAGCTCTTAGCTCACAAAACCAACCAACCATCCAACTAA
CCAACCACTTATTGCCCTCGTTCCATCTTAAGTTGTGCATCAGATTCGTA
ATTCAGTGTTTAAAAGCCATTTTGGCCATCTGAAGAGAAATACCTAGCAC
CGGTTACTTGCATGTCGCCCCCAGGATTCGG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGTTGAATATGGTGGGAGGCAGAAGCC
AGCAGAAATAAATGATCCATATCCTACCAGAGTTAAATCAACAGTGTGGT
TTGGAAAGAGGTCCAACTGTGCTCCTCCCAGATTTCAGCACCACACATAT
AAACTGACAACATGACTGCTTCTTAGTATGCATAAGGGAATGGTGTTTAT
GAGATAAGAGGGAGAGAGAGAGGGAGGGGAAGAGGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNTNNNTNNNNNNNNNNNN
NNNNNNNNTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCCCTTTTAAAAAAAAAAAAAAAAATTCCTG
TGGGGGGGCGGGTCCTTTCTTTTTTTCCCTCCTCTTCTTTCGTCTTATCT
TTGTTTTTCCTCTACTTTTTACTTATTTACACCTTTTCATTATTTTATCT
TATTTTCTTTTTTTTATATCTTATTTCCTCTCCCCTTGTTTTTGTATTTG
CATCTTTTTTTTCATCTCAACAACTCTAGATTCCCTTTTTTTCCTTTCCC
GTATCCTCCTCCCTCCATCTTCATTTTTCTTTTCTTTTGTCATATTCACG
CATTTTCCACTTCCCTTTAATTATTTTTTTCCTTCCTCTCACTTAAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_i22.g1 MSMg01no269_i22.g1 CHROMAT_FILE:
MSMg01no269_i22.g1 PHD_FILE: MSMg01no269_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:03 2005
         (217 letters)



>mm_chr10_12425699_12426315
          Length = 617

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagttgaatatggtgggaggcagaagccagcagaaataaatgatccatatcctaccaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agagttgaatatggtgggaggcagaagccagcagaaataaatgatccatatcttaccaga 260

                                                                       
Query: 61  gttaaatcaacagtgtggtttggaaagaggtccaactgtgctcctcccagatttcagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaaatcaacagtgtggtttggaaagaggtccaactgtgctcctcccagatttcagcac 320

                                                                       
Query: 121 cacacatataaactgacaacatgactgcttcttagtatgcataagggaatggtgtttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacatataaactgacaacatgactgcttcttagtatgcataagggaatggtgtttatg 380

                                              
Query: 181 agataagagggagagagagagggaggggaagagga 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 agataagagggagagagagagggaggggaagagga 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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