BAC Information

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BAC

Clone NameMSMg01-269J21
Chromosome10 (Build37)
Map Location 14,944,653 - 14,944,945
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269J21.T7 (MSMg01no269_j21.b1)MSMg01-269J21.TJ (MSMg01no269_j21.g1)
ACCAG409686AG409687
length728731
length of high quality
(start - end)
295 (434 - 728)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no269_j21.b1 PHD_FILE: MSMg01no269_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:07 2005CHROMAT_FILE: MSMg01no269_j21.g1 PHD_FILE: MSMg01no269_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCACTAATTCCCTCCGGTCCTGGGCTTTTTGTGATTTGGAGATTTTAAT
GACTGCTTCTACTTCTTTACCCCATATGGAACTGCTTAGTTTGTCTGGTC
CTGATATAATGTTGGTATCTGGTATCTGTCTAGAAAATCATCCATTACAT
CCAGATTTTCCAGTTTTGTTGAGTAATAGAATCTGATTTTTTTTCCTGAG
TTTCTGTTATTATGTCTCCCTCTTCATTTCTGATTTTGTTAATTTGTGTA
CCATCTCTGTGCCCTTTAGTTATTTTGGATAAGAGTTTATCTTCTTGATT
TTCTGAAATAGCCTGNGTTCATTTCCGNCCACTCTTTGTATAGTACCCTT
TGTTTCTAATTGGTTGATTTCAGATAAAAGAATATTTCCTGTCATCTACT
CCTCTCGCATGTATATGTTTCTTCTAATGATTCCAGATGTGCTGGTTAAG
TTGCTTGTGTAGGATCTCACCAATTTCTTTATGAAGCTACTCAGTCTATG
AATTTTCCTCTTAGCACTGCTTTCATTGTGTTCCTTAAGCTTGGATATGT
ATACCTTCATTTTCCTCAAATACTAAAAAGTCTTCAATTTCTTTCTCTGT
CTCTTCCCTGATCAAGTTATCATTAAGTAGAGAGTTATACAATATGTGGG
CATTCTGTTGTTTTGTTATTAAAGGCAA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCTTGCAAATCGAAGACGGTCATATATT
ATGGTCTTTTAACTCAGGGAAATACATAACATCCATTTCTTAAGTAGTTA
CAACATTCAAAAGTGAATTTCTATCAATTCATGGAATAAGAAGAGCCTTG
CAGAAATTGAGACATGAAATGTTTGAGACAAAGTACTGTATTTTCCACAA
GTCTCATGTGGAAGTGGAAAATAGAAAAGAGAAGATAAACAGAAACAAAT
ATAAAATGTGAATTGCTTTGGTTTGTCTATATCCAGATCTCAGTCCTTGC
ATTACCTGACATATGGTGAAATCCCGAACANTCACTGAAGATCGATGGCC
CTAAAGAATTAGGTAGGGCTCATTCCTTTAGATGGTAGAATTATGACGAG
GTATTTACTTTCAAAATGAGTAGGAAATATAGACAGAAGAATGATAACAG
TCACAAAGCTTAGTTCTATAATGTAATATAAGGTTATATGATAAGGTTAC
AGATGAAAAAATTGGTTAGAATTTTATTCAATAGGACTGATAGTTGTATG
TATAGAGTCTCATGACACTTTTTTCTCTCTCCCTCACTTCCCCTTCCTCT
ACTCACACAGAAGCATGTATGTGCATATTTGAGTAGCATATATGCACACA
ATATATTTTACACACATGTATGTCTGTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_j21.g1 MSMg01no269_j21.g1 CHROMAT_FILE:
MSMg01no269_j21.g1 PHD_FILE: MSMg01no269_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:07 2005
         (294 letters)



>mm_chr10_14944453_14945146
          Length = 694

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttgcaaatcgaagacggtcatatattatggtcttttaactcagggaaatacataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcttgcaaatcgaagacggtcatatattatggtcttttaactcagggaaatacataac 260

                                                                       
Query: 61  atccatttcttaagtagttacaacattcaaaagtgaatttctatcaattcatggaataag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacatttcttaagtagttacaacattcaaaagtgaatttctatcaattcatggaataag 320

                                                                       
Query: 121 aagagccttgcagaaattgagacatgaaatgtttgagacaaagtactgtattttccacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagccttgcagaaattgagacatgaaatgtttgagacaaagtactgtattttccacaa 380

                                                                       
Query: 181 gtctcatgtggaagtggaaaatagaaaagagaagataaacagaaacaaatataaaatgtg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctcatgtggaagtggaaaataaaaaagagaagataaacagaaacaaatataaaatgtg 440

                                                                
Query: 241 aattgctttggtttgtctatatccagatctcagtccttgcattacctgacata 293
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aattgctttggtttgtctatatccagatctcagtccttgcatttcctgacata 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)