BAC Information

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BAC

Clone NameMSMg01-269L22
Chromosome10 (Build37)
Map Location 40,370,394 - 40,494,758
singlet/doubletdoublet
Overlap gene9030224M15Rik
Upstream geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
Downstream geneCdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L22.T7 (MSMg01no269_l22.b1)MSMg01-269L22.TJ (MSMg01no269_l22.g1)
ACCAG409778AG409779
length739740
length of high quality
(start - end)		321 (41 - 361)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no269_l22.b1 PHD_FILE: MSMg01no269_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:16 2005CHROMAT_FILE: MSMg01no269_l22.g1 PHD_FILE: MSMg01no269_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,494,442 - 40,494,758)(40,370,394 - 40,370,684)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCCAAGCACTCAAGATAAATTACTGCTGATAACAGAGTGTGGAAGAAGC
TAGAGAAGGAACTCAGCTTCCTTCACAAGACAAATTTTCTTCAACTCTTG
CCTGTGATAAGCCCAGCTATGAGAGAAAACTTCAGGTGACTCTCAGAGGG
GACATTTACAGGTTTGCCCTTAGTGCCATCAGCACACTTGTGTGTGTATG
TGTGTGTGCGCCCATGTTCATACATGCATGCATGTGTGTGCATGGAGTTT
AGGAACAACACTGCTAGCCAAATCCCTATCTTTTCTACTTCCTATGACAC
TTTTCAGGCCAATTTAATTATTCCCCGCCCCCGCTAAGTCTTTCATCTCT
GGCTCCCTTGTGTTAAAACAGTACTGGAAGACTGGGAGCCAGCCCCTTGG
CAGGTAGAGCACTCCTTTTGTTTTTTTACCTTGCTGGTGCTTTTGGCTTT
TCTATATCATATTGATCTTTACAAGGAAGCAGGGAGATGCTAAACTTTAT
CTCTGTACATTCCTCTTAGAAAAAGCATGTGTTAAAGCCTACACTGAGGA
AAGACCGGGAGCTAACAAAAGAGTCACAGTAATTAGGGCATTTAGTTTTC
TGTGAAATGATAAGAGCTTACTTGCACTATGCCTAGCACTAGAGACTTTG
TCCCTTAAACACATGTCCTCAGCAGACCATCTTTAAATC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGTGTACGCCTGGGCATGCCGTGGAGT
GTGGTTGATATGTGGAGTGCCACACCAATGGAGAACACTGACTTCCACTT
TGCCATCAGGTGTCGACTGTAAACAGCACCTTGGGTAGGGGTGGGGACGT
GGGTCTACAGCCCCTCAGTGCTGGGACACCATGTGGCTCGAACGTGCTTT
AAATGTCTCCTCATCCGGTTCTTGCACCATGTGGATGCCCAGCCTCTGCA
TTTTGCATCTCGAGTCTCCCACACTCCATGACCTCTCCCTGTTTGCCATT
CTGGTTCAGTTTTTTTTTATTTCACACCTCCAAAGCTCCACACTGTAAGA
CTGAAAGATCAGAGGCGCCCTGGCTACATGAACCGATTTCATTGTCCAGG
GAATCATCCCCCAAGATGCAGCACAGGAAACCAGCCTGCTGTGTGTCAGA
CTTGCATGGCTCCAATCCAGAAACCTAAACAATACTTCTGTAAGGATTGA
CACAAAATGCTCAGAGCATGATTGATAACCAAGATCTTCCTTAATTTTGT
CTTTCCTTCTAAATTTGGATCAACCCAAGGAATCAAAATATGCACCACTA
TCCAGTGACGGTGGATGTCTGTCTTTGTGGGCCTGCTTGCTGTTTCCCAT
GTGGAAAGGCTCCAATCCGCACATTACTGATGCCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l22.b1 MSMg01no269_l22.b1 CHROMAT_FILE:
MSMg01no269_l22.b1 PHD_FILE: MSMg01no269_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:16 2005
         (321 letters)



>mm_chr10_40494361_40495081
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccaagcactcaagataaattactgctgataacagagtgtggaagaagctaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattcttccaagcactcaagataaattactgctgataacagagtgtggaagaagctaga 339

                                                                       
Query: 65  gaaggaactcagcttccttcacaagacaaattttcttcaactcttgcctgtgataagccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaaggaactcagcttccttcacaagacaaattttcttcaactcttgcctgtgataagccc 279

                                                                       
Query: 125 agctatgagagaaaacttcaggtgactctcagaggggacatttacaggtttgcccttagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agctatgagagaaaacttcaggtgactctcagaggggacatttacaggtttgcccttagt 219

                                                                       
Query: 185 gccatcagcacacttgtgtgtgtatgtgtgtgtgcgcccatgttcatacatgcatgcatg 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 218 gccatcagcacacttgtgtgtgtatgtgtgtgtgtgcccatgttcatacatgcatgcatg 159

                                                                       
Query: 245 tgtgtgcatggagtttaggaacaacactgctagccaaatccctatcttttctacttccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tgtgtgcatggagtttaggaacaacactgctagccaaatccctatcttttctacttccta 99

                            
Query: 305 tgacacttttcaggcca 321
           |||||||||||||||||
Sbjct: 98  tgacacttttcaggcca 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_l22.g1 MSMg01no269_l22.g1 CHROMAT_FILE:
MSMg01no269_l22.g1 PHD_FILE: MSMg01no269_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:16 2005
         (294 letters)



>mm_chr10_40370194_40370887
          Length = 694

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtgtacgcctgggcatgccgtggagtgtggttgatatgtggagtgccacaccaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgtacgcctgggcatgccgtggagtgtggttgatatgtggagtgccacaccaatgg 260

                                                                       
Query: 61  agaacactgacttccactttgccatcaggtgtcgactgtaaacagcaccttgggtagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacactgacttccactttgccatcaggtgtcgactgtaaacagcaccttgggtagggg 320

                                                                       
Query: 121 tggggacgtgggtctacagcccctcagtgctgggacaccatgtggctcgaacgtgcttta 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggacctgggtctacagcccctcagtgctgggacaccatgtggctcgaacgtgcttta 380

                                                                       
Query: 181 aatgtctcctcatccggttcttgcaccatgtggatgcccagcctctgcattttgcatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtctcctcatccggttcttgcaccatgtggatgcccagcctctgcattttgcatctc 440

                                                              
Query: 241 gagtctcccacactccatgacctctccctgtttgccattctggttcagttt 291
            |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 441 aagtctcccacactccatgacctcttcctgtttgccattctggctcagttt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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