BAC Information

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BAC

Clone NameMSMg01-269L23
Chromosome10 (Build37)
Map Location 125,214,249 - 125,214,538
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
Downstream geneLrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L23.T7 (MSMg01no269_l23.b1)MSMg01-269L23.TJ (MSMg01no269_l23.g1)
ACCAG409780AG409781
length719721
length of high quality
(start - end)
174 (135 - 308)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no269_l23.b1 PHD_FILE: MSMg01no269_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:16 2005CHROMAT_FILE: MSMg01no269_l23.g1 PHD_FILE: MSMg01no269_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGACCTCCGCGGAAT
TCCTAAATTTTTCCCAAAAAATAAGTTCTGNCAATAAGAACCAGGAACAA
AAAGAAGACCCACTGGTTTTGGCACTCAAGAAGCCTTTGTATTTTTAAAT
ATGCCTTAGGCAGCATAATAGCTGAACGACTGACTACCATCCATGCTGTT
AGAATCTAACTTCCTATCTATAACCCAAGTTTACTTACTATGTTTTATCT
GGGCTGCTCTTAACTCCAGTTAGCTCCAATTGGCTCCCATATGGTCACAT
TGTGTATGGTTCAGCTAACCCTTTTTTTTTCTCCTTCTTTCTCCTCTCCT
AGTGGTCTCTTTTTTTTATCCCCACCCCCCACCCATGCCTCTTCTCCTCA
GCTATTGGCTGATGGCATCTTTATTCATAAACCAAAATCAACTTAGGGGC
AGGGTCCCAGAGGCTACATGTAGGCTGATGGGGAGCTGGCGAATGTAGCC
AGTACCCAACATCATGGACCAGGGTTGCTAGTGATTGCTAGCCTGAGAAA
TCACCATGCATCACAACTGGAATCATGATTTCTATGGAAAGCACATAACT
TTTGCACCATTGTAGAGTCAAAATCAAAATCACAAAGGAAGAAGCCCAAT
TTCCATAGCGCACAGATACTATTGTTTCTATGGGAAATATTTAACTATCT
ACGGAACAATAGTTACCTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGGATCTGCCTGTCTCTGCCTCCCA
AGTGCTGGGATTAAAGGTGTTCACCACTACACTTGGCTTCAAATTTTTCG
TATGATAACGCATGGTAGATGAATAAATTCATTGCTGTTGAATGTCTAAT
AGGGGTCCATTACCATGTATTCAATGGAACCATTTCTGTTGTGAAAGCAT
TTGGGAGGTTTATCCCCACCATTATTTAGGGCTATTCTGGTTACACTTCT
TGGTAGATTAGCTGCTGTTTCTGCAGTTGATTACTGTGACACCGGACGTG
TGGTGTGTCATTTTGTTANCCTCTTTCCCATGCCTGCAGAGAATTTATGT
ATACAATCCCTCTGCCTGCTGAGGAAAACAACAACAGCAAAGAGGGATGG
TAATAAGAAAAATAAATTCGTTTTGTAGGAATTTTGAAACAACCGAATGT
GATCCCTAGAAAGTTATTCTCATAGGCTGCTCCTCTCTTAGGGGGCATAG
CAAGCCTCCCAGTGGCCTATTCTTTATTTATGATGCACTTTCTGCTTTTG
CCTCATGCTGCGGCTCAGCTGGTAATCTTGTTTTGCAATGCAATATGGCC
AGGAGCCCTGGGACCAGCTCCCTAATGCATTGGTTCTCAGACTGGAGCCC
AAGAACTCCTGTGGGGCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l23.g1 MSMg01no269_l23.g1 CHROMAT_FILE:
MSMg01no269_l23.g1 PHD_FILE: MSMg01no269_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:16 2005
         (290 letters)



>mm_chr10_125213972_125214661
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggatctgcctgtctctgcctcccaagtgctgggattaaaggtgttcaccactacactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agggatctgcctgtctctgcctcccaagtgctgggattaaaggtgttcaccactacactt 508

                                                                       
Query: 61  ggcttcaaatttttcgtatgataacgcatggtagatgaataaattcattgctgttgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggcttcaaatttttcgtatgataacgcatggtagatgaataaattcattgctgttgaatg 448

                                                                       
Query: 121 tctaataggggtccattaccatgtattcaatggaaccatttctgttgtgaaagcatttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctaataggggtccattaccatgtattcaatggaaccatttctgttgtgaaagcatttgg 388

                                                                       
Query: 181 gaggtttatccccaccattatttagggctattctggttacacttcttggtagattagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaggtttatccccaccattatttagggctattctggttacacttcttggtagattagctg 328

                                                             
Query: 241 ctgtttctgcagttgattactgtgacaccggacgtgtggtgtgtcatttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgtttctgcagttgattactgtgacaccggacgtgtggtgtgtcatttt 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)