BAC Information

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BAC

Clone NameMSMg01-270P23
Chromosome10 (Build37)
Map Location 69,694,826 - 69,695,223
singlet/doubletsinglet
Overlap genenone
Upstream geneRhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik, Ccdc6, 2310015B20Rik
Downstream geneSlc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270P23.T7 (MSMg01no270_p23.b1)MSMg01-270P23.TJ (MSMg01no270_p23.g1)
ACCAG410675AG410676
length724756
length of high quality
(start - end)
321 (44 - 364)639 (71 - 709)
definitionCHROMAT_FILE: MSMg01no270_p23.b1 PHD_FILE: MSMg01no270_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:47 2005CHROMAT_FILE: MSMg01no270_p23.g1 PHD_FILE: MSMg01no270_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGCCAACATTTTCCCACTTACGAATCTTTTCAATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTATACCGTGTGCAGTCCTCACAGAGGTCAGA
AAGGGTGTTGGGTTCCCTGGAGTTGGGATTACAGATGGTTGTGATCTGCC
ACGTGAATGCAGGGAGCTGAATGCTGGTCCTCTGGAAGAGTAGCCAGTGC
TCTTAACCACCTCGCCACCTCGCCAGCCTCTTGTGGATTAGAGAGATGCA
AAGGGTGGGATTTTGCATACAGCCTCATTTACATTTCATGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGCTCTCTCCTACCATGTAAGGGGCCAG
CTTGTTGAATCCTTACTGTGATTCTGCAGATCAGTCCCTCTTATACTCTT
TGCTATGAACCACAAGTAGATGAACCAAGGCTTCGTTATTTGGCGGTGTG
TGTGGGTGGGTGTCTCAGGCTTTTCAGATGATGCCAGGGTTTGAACTTGG
CTCTGGTTTCTAAGGGAACGCACAAGGTAACAGCGAGAGGGTAGTATGTT
AACTTAGGGGCAGTTTCCTCTTCCTCTGGTTTGAACCTTTTGGATTGTTT
TCCCCCACCATATGGTCCCTTACTGAAGTCATTTACTGAGGTCCTCCGGG
CTGGCCTCCTCATGGTAATTTCCC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAGTTGTCCACAAGACTGAATGTCTCAA
CAGTCCCACTCTGGTGCTGAAGGCCTGGAGGATTCCTGGGGAGCTGCTGC
TCTGCACTTCACATTTGAATCCCAGAGAAATTTGTTGTAAATTGAGGGGA
GGAATGCCACAGCAACAGGATAGATGAGCTCGCCAGCAAGAGTGATGGCA
AGCAGGCAAACAGCGACCATTTTCATTTGTCTGAGCTGCCCTCGGAGGAC
AAGACCCCAATTTAAGGTGAGTCTTTCTACTTCAGATAATCAGATTAAGA
AAATAATTTAGAGCTGGGCATGATGGCGCACGCCTTTAATCCCAGCACTC
GGGAGGCAGAGGCAGGCAGGTTTCTGAGTTCGAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGGACAACCAGAGCTATGTAGAGAAACTCTGCTTCAAAA
AAACAAAACAAAAAAAAAAACAAACAAAACAAAAAACCAAAAAGAATTTA
TAAAAGTCTAACAGCTCTTCTACTGCTCAAAGCCAGATTCAGCAAGTTAT
TAAAAAAAGACATGAAGTGGGAAGAAGATCTGGGAGGGTTTGTAGAACAG
GAAGTGGGTAATATAAGAAACGCATATGTATGTATATATTTCAAATCAAT
AAAACATTTTTAAAGGGTAAATTTTAGCCAACATTAGTGTGTATGTATAT
ATACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_p23.g1 MSMg01no270_p23.g1 CHROMAT_FILE:
MSMg01no270_p23.g1 PHD_FILE: MSMg01no270_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:47 2005
         (639 letters)



>mm_chr10_69694187_69695223
          Length = 1037

 Score =  636 bits (329), Expect = 0.0
 Identities = 377/399 (94%), Gaps = 13/399 (3%)
 Strand = Plus / Minus

                                                                        
Query: 253  ctttctacttcagataatcagattaagaaaataatttagag-ctgggcatgatggcgcac 311
            |||||||||||||||||||||||||||||||||||||| || || |||||||||||| | 
Sbjct: 1037 ctttctacttcagataatcagattaagaaaataatttatagcct-ggcatgatggcgaat 979

                                                                        
Query: 312  gcctttaatcccagcactcgggaggcagaggcaggcaggtttctgagttcgaggccagcc 371
            |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 978  gcctttaatcccagcactcgggaggcagaggcagtcaggtttctgagttcaaggccagcc 919

                                                                        
Query: 372  tggtctacaaagtgagttccaggacaaccagagctatgtagagaaactctgcttcaaaaa 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  tggtctacaaagtgagttccaggacaaccagagctatgtagagaaactctgcttcaaaaa 859

                                                                        
Query: 432  aacaaaac---------aaaaaaaaaaacaaac--aaaacaaaaaaccaaaaagaattta 480
            ||||||||         ||||||||||| ||||  |||||||||||||||||||||||||
Sbjct: 858  aacaaaacaaaaaaccaaaaaaaaaaaaaaaacaaaaaacaaaaaaccaaaaagaattta 799

                                                                        
Query: 481  taaaagtctaacagctcttctactgctcaaagccagattcagcaagttattaaaaaaaga 540
            |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 798  taaaagtctaacagctattctactgctcaaagccagactcagcaagttattaaaaaaaga 739

                                                                        
Query: 541  catgaagtgggaagaagatctgggagggtttgtagaacaggaagtgggtaatataagaaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738  catgaagtgggaagaagatctgggagggtttgtagaacaggaagtgggtaatataagaaa 679

                                                   
Query: 601  cgcatatgtatgtatatatttcaaatcaataaaacattt 639
            | |||||||||||||||||||||||||||||||||||||
Sbjct: 678  cacatatgtatgtatatatttcaaatcaataaaacattt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1037
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1027
Effective search space:   645983
Effective search space used:   645983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)