BAC Information

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BAC

Clone NameMSMg01-271D23
Chromosome10 (Build37)
Map Location 22,498,756 - 22,499,048
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1
Downstream geneTcf21, Eya4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271D23.T7 (MSMg01no271_d23.b1)MSMg01-271D23.TJ (MSMg01no271_d23.g1)
ACCAG410856AG410857
length782754
length of high quality
(start - end)		321 (39 - 359)293 (70 - 362)
definitionCHROMAT_FILE: MSMg01no271_d23.b1 PHD_FILE: MSMg01no271_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:05 2005CHROMAT_FILE: MSMg01no271_d23.g1 PHD_FILE: MSMg01no271_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TCGAGGATCCAGTATGGGTGGCGCAGCAAAATCCGGAGACCTCAAACCAG
ACCAATTACTCATTATAATAAACATAGGCAAGTAAAGATGCTTAGACAAA
AGGGTACACAGTAAAACACACTGTGGCACACTACAGCTTCCATGACAAGG
TTTTTTTTTTGTTATTCTATTTTATTTTCGTTTCTTTTGGAGGTGGGGGT
GGCAAGGGTATAAGGCAGATATGAAGGGATAAAGAGATGAGTGAGATTGG
GTGCATGATGTGAAACTCATAGTCAATAAAAATTTATGAAAATTAGTCTT
TCTTCCATAGAATATTTGATACCCCCCCACCCCATTGTGTATGTTTTAGA
GAAATTAATATGCCTCCACACCTCNAAGTCATAAAGTATAANAAATTGAA
GTTTTTTCATGATTTAGCTTATCACTACAGAAACCATAAATTAAATTCTA
CAAATATGCTAAGAAGAAAGCACAAAGCACCATTATTTGGACAGTCCCAT
CAGAAAGCCAAAAATGTTTTTAAATCTTACAATTGATAAGCCTGAGCTGA
ATACACCAAGAATAAAAAATCATGAAAAATATTGTAGAAGCACTTTTTAA
AATATCTATAAGGCAAGAAAATTAAAACTTCTACTTATAATAACAACTAT
TAAATGAAATATTCCCCTTATGTGGGATGTAGAGACACAAGATCAAGGTT
TCCAAGTTAACTGAGCCCCGGCAAAAGCCGAG

CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGGAGAAATCGCATTTGCGTTGTACCTTC
AAAAGAAAGGAACCTTGCAAAACTGCAATATAACTACAATCATGGGAACC
CTCCAGGCAGAAGGAGAGGTGCAGACACATAGCTGTCCATTTGGGACAAA
CGTCTTGAGACAGCGATAGAGCCTGGAAGGTTTGAGTGCTGGGCACACAA
GTACAGGAAGGCATGGAAGAATTCCATGAAGATTTGGCTTCTGTGTGGAA
TAGATTAAATTGGGACCTAAGCAAAGTCACTCATAAGAAAATTACTACAG
TAACCATGATATATGGAAATTCACACCTACAATTGAAACATGGGAAGGGG
AAAGGGAAAGAGAAAATCAGTACATAAAAATAATGTGTAGTAAGATCGCC
GTAGGCCCCAGGTGGGTGGCTGTGAGAGATGATCTTGACAAAGCTGGTGT
AGCAACAGGAACAAAGAGTCATGGGGGAAAGTATTAGCATTGACTCTCTA
GTCTGGGTGGAGCATACTATGACGAATGGAAAGTTCTGGGCTGGCAAGAT
GGCTTAGCAGGTAAAGGCGTTTGCCAACAAACATGATGACCTGAGTTTAA
CCCCAGAGTGCCTATGGTGGGAGGAGAGAGCAGACTCTGAAAGCTGTGTG
TTCGCACATATACACAGACACCGCTTGAATAAATAAGTGGGAAAAGATTT
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_d23.g1 MSMg01no271_d23.g1 CHROMAT_FILE:
MSMg01no271_d23.g1 PHD_FILE: MSMg01no271_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:05 2005
         (293 letters)



>mm_chr10_22498556_22499248
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggagaaatcgcatttgcgttgtaccttcaaaagaaaggaaccttgcaaaactgcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggagaaatcgcatttgcgttgtaccttcaaaagaaaggaaccttgcaaaactgcaat 260

                                                                       
Query: 61  ataactacaatcatgggaaccctccaggcagaaggagaggtgcagacacatagctgtcca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 261 ataactacaatcatgggaaccctccaggcagaaggagaggtgcagacacacagccgtcca 320

                                                                       
Query: 121 tttgggacaaacgtcttgagacagcgatagagcctggaaggtttgagtgctgggcacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgggacaaacgtcttgagacagcgatagagcctggaaggtttgagtgctgggcacaca 380

                                                                       
Query: 181 agtacaggaaggcatggaagaattccatgaagatttggcttctgtgtggaatagattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtacaggaaggcatggaagaattccatgaagatttggcttctgtgtggaatagattaaa 440

                                                                
Query: 241 ttgggacctaagcaaagtcactcataagaaaattactacagtaaccatgatat 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgggacctaagcaaagtcactcataagaaaattactacagtaaccatgatat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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