BAC Information

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BAC

Clone NameMSMg01-271F21
Chromosome10 (Build37)
Map Location 60,608,538 - 60,782,740
singlet/doubletdoublet
Overlap geneSgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384
Upstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1
Downstream geneNodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F21.T7 (MSMg01no271_f21.b1)MSMg01-271F21.TJ (MSMg01no271_f21.g1)
ACCAG410940AG410941
length774751
length of high quality
(start - end)		329 (381 - 709)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no271_f21.b1 PHD_FILE: MSMg01no271_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:13 2005CHROMAT_FILE: MSMg01no271_f21.g1 PHD_FILE: MSMg01no271_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,608,538 - 60,608,866)(60,782,450 - 60,782,740)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATA
AAATTTGGCACAAGAATCTATTTTCAGTAGACTTTTCATTAGGCTGTGAA
GACTAAGCAAGTATTCCTCGTCTTTCATCTGCACTATACAAACTTCAAGG
TCAGCTCCAGCTTCCTAAGGTGTTCTCAGACATCCTGTATACTTAGTGAT
ATGCTGTCTCCAAGAGCCCAGCATGATGGTGCACTGAGAAGGTTGAAGGA
TTGCTAGTTTAAGGCCATCCTAGGCTACACTAAGAGCTTCTGCCTCAAAA
AGAAAACAAGCTCATTAATCCCAGCACTCAGGAGGCAGAGGCAAGCAACC
CTCTTATTAATCNTTGCCACCCTCACCTACATAGCAAGTTACAGGCTAGC
CTGGACTACATAATGAGCCCTCCATCTACAAGAACCAACCAAAAGAACCC
AAACAAACAAACAAAAAAATCCCAGCACTAGGAGGTAGAGGGAAATGACT
AAAAGTTCAAGGCCAAGTGTACCTGCTAAGTTCCAGGCCACCCTGAGTTC
CAGAGGCAGCCATTGTTTCAGAAACAAAACAAAAGCAATTGCTCTAGTGG
TAGGAGAAGGAAGAGAGAAAAGCCGTGAGCAAGGGCTGTAGAAAGATCCT
CAGGGAATTTCTAAGTTCTGCATCCACCGTATTCATCCATTTATTCACCC
CGAGCATTCACGCCAGTTTTCCAAGCCAACAATAACAAAAGAAAAGAAAA
GTGGCCGCGAATGCTGAGCTTTGN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTGCAAGCTGCTGTATGTCTGTCCACGC
CTTCTCAGGTTTGCTGGTGTCTATTTTGTACAAGTCAGTGCTTTTCAGAA
AAGGTCTAGCCAGTGAGTCAGAGGCCAGAGAGACCCTTCACACTCTTGTG
GTTGGCACTGACTTGGAGATATGCTGGGACCAATGGCAGATCACTTTACC
TCTCTGCCTCAGTGTCACTGTCTGTAAAATTGGAGAATAATACTTGCCTA
CCTACCTCACAGGGGTGTTGTGAGGAATCCTTTATGGTTTTCTGTTTTTT
TGTTTTTGTTTTTGTTTTTCGCCCCCCCCCCTGAGCATTAAAACCATCTA
AACATGTAACATACCGCTTTGATGAAAGAACTTCAGTGTGAGGCAGACAT
GGAAGCTGTGCATATAAATGTGTCCCCCCAGAGTAAGGGTGGATGCAGGA
GAATGGAATGTCCTTGTTACTAGCACCCCTGATGTTTAGAGGCTGCGGGT
GTTATAGATGTCACATCCTCCTTCCTTGTCATCAATCACAGCCTACCATC
TTATACTGGATGCTTAAAGTGGACGTGTTTATCCTTTATCCACTGTCCAC
CCAGAAATTGTACCTTATGCTTGTCTTCCCGCCAATTTTATGTGTGCGTT
AGTCATGCTTCCACCCCTCTTATATCCTCCCGCCTCTTTATTTTATTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f21.b1 MSMg01no271_f21.b1 CHROMAT_FILE:
MSMg01no271_f21.b1 PHD_FILE: MSMg01no271_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:13 2005
         (329 letters)



>mm_chr10_60608338_60609066
          Length = 729

 Score =  621 bits (321), Expect = 0.0
 Identities = 327/329 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcaagttacaggctagcctggactacataatgagccctccatctacaagaaccaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atagcaagttacaggctagcctggactacataatgagccctccatctccaagaaccaacc 260

                                                                       
Query: 61  aaaagaacccaaacaaacaaacaaaaaaatcccagcactaggaggtagagggaaatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaacccaaacaaacaaacaaaaaaatcccagcactaggaggtagagggaaatgact 320

                                                                       
Query: 121 aaaagttcaaggccaagtgtacctgctaagttccaggccaccctgagttccagaggcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagttcaaggccaagtgtacctgctaagttccaggccaccctgagttccagaggcagc 380

                                                                       
Query: 181 cattgtttcagaaacaaaacaaaagcaattgctctagtggtaggagaaggaagagagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cattgtttcagaaacaaaacaaaagcaattgctctagtggtaggagaagaaagagagaaa 440

                                                                       
Query: 241 agccgtgagcaagggctgtagaaagatcctcagggaatttctaagttctgcatccaccgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccgtgagcaagggctgtagaaagatcctcagggaatttctaagttctgcatccaccgt 500

                                        
Query: 301 attcatccatttattcaccccgagcattc 329
           |||||||||||||||||||||||||||||
Sbjct: 501 attcatccatttattcaccccgagcattc 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_f21.g1 MSMg01no271_f21.g1 CHROMAT_FILE:
MSMg01no271_f21.g1 PHD_FILE: MSMg01no271_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:13 2005
         (291 letters)



>mm_chr10_60782377_60783067
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgcaagctgctgtatgtctgtccacgccttctcaggtttgctggtgtctattttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttgcaagctgctgtatgtctgtccacgccttctcaggtttgctggtgtctattttgta 305

                                                                       
Query: 61  caagtcagtgcttttcagaaaaggtctagccagtgagtcagaggccagagagacccttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caagtcagtgcttttcagaaaaggtctagccagtgagtcagaggccagagagacccttca 245

                                                                       
Query: 121 cactcttgtggttggcactgacttggagatatgctgggaccaatggcagatcactttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cactcttgtggttggcactgacttggagatatgctgggaccaatggcagatcactttacc 185

                                                                       
Query: 181 tctctgcctcagtgtcactgtctgtaaaattggagaataatacttgcctacctacctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tctctgcctcagtgtcactgtctgtaaaattggagaataatacttgcctacctacctcac 125

                                                              
Query: 241 aggggtgttgtgaggaatcctttatggttttctgtttttttgtttttgttt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aggggtgttgtgaggaatcctttatggttttctgtttttttgtttttgttt 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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