TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGAAATTTTAGGAAATAGCAACCCAGTTATGAAATTCTTTGACTT
CCTGGCATTCCAAAGAGAGAATGTATGCCTTTATGCATTCTTAAGACTGA
TAAATGAGTATGAATGGACTGCATTGTTTGAAAAGGAAGTATACTTCTGT
AAGGACCTAGATAGGGCTCAGGTCAGTGCAGATACGAACAAAACACAGCC
TTTCGTTTAAGAGCTCAACTCTGATGTCTAGGAAGTACAGTGTTTTTTCT
TATCCTCCAAAACCTTCATATGTAAAAATATTATTATGACAACATTACTA
TTGGGGTCATTAATTAAATCCCTTGCTTCCCTATCTTCTTAACATACTTA
TGTTTCATAATATTTTACTTCCTGTTTTGCTTCTATACATATGTTTACTT
TACCAATTATAATTATATTGAGCATTCAATTTAATATTATTTTTTTGCTT
ACTATTCTAGGGATAGTATTTTCCTTATGTTTGCTTTGTTTTGCTTTTTT
TCAAGGCTAGCCAGGAACTCCCAATCCTACTGTCTTTGACAAGCAAAATC
TGGAACTACAGGAGAGTACCTATTTTTCCTGGTTCCCATATTTTACAAGG
TTTATATTAATAATTTCAAATATCTGAATGTTATCCTCTTGGACAGACCC
TCCAGATTTTATATAAAAGTTTATTTTATATGTTTTTATTATGTG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTAAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATGATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCA
ATACCTCTCCTGGGTAATATACCCCCCACCCCCAACTGGTAAGAAGGACA
CATGCTCCACCCCCCCACAGCAACCTTATATATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTGAACAGAAGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACA
CATGAAACTCTTGAAGAATGATGACCATAGTGTGTACC

Query= MSMg01no271_l03.b1 MSMg01no271_l03.b1 CHROMAT_FILE:
MSMg01no271_l03.b1 PHD_FILE: MSMg01no271_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:37 2005
         (699 letters)



>mm_chr10_52550599_52551697
          Length = 1099

 Score = 1313 bits (679), Expect = 0.0
 Identities = 691/695 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaattttaggaaatagcaacccagttatgaaattctttgacttcctggcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaattttaggaaatagcaacccagttatgaaattctttgacttcctggcat 264

                                                                       
Query: 65  tccaaagagagaatgtatgcctttatgcattcttaagactgataaatgagtatgaatgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaaagagagaatgtatgcctttatgcattcttaagactgataaatgagtatgaatgga 324

                                                                       
Query: 125 ctgcattgtttgaaaaggaagtatacttctgtaaggacctagatagggctcaggtcagtg 184
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ctgcattgtttaaaaaggaagtatacttctgtaaggacctaaatagggctcaggtcagtg 384

                                                                       
Query: 185 cagatacgaacaaaacacagcctttcgtttaagagctcaactctgatgtctaggaagtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagatacgaacaaaacacagcctttcgtttaagagctcaactctgatgtctaggaagtac 444

                                                                       
Query: 245 agtgttttttcttatcctccaaaaccttcatatgtaaaaatattattatgacaacattac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgttttttcttatcctccaaaaccttcatatgtaaaaatattattatgacaacattac 504

                                                                       
Query: 305 tattggggtcattaattaaatcccttgcttccctatcttcttaacatacttatgtttcat 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattggggtcattaaataaatcccttgcttccctatcttcttaacatacttatgtttcat 564

                                                                       
Query: 365 aatattttacttcctgttttgcttctatacatatgtttactttaccaattataattatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatattttacttcctgttttgcttctatacatatgtttactttaccaattataattatat 624

                                                                       
Query: 425 tgagcattcaatttaatattatttttttgcttactattctagggatagtattttccttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgagcattcaatttaatattatttttttgcttactattctagggatagtattttccttat 684

                                                                       
Query: 485 gtttgctttgttttgctttttttcaaggctagccaggaactcccaatcctactgtctttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtttgctttgttttgctttttttcaaggctagccaggaactcccaatcctactgtctttg 744

                                                                       
Query: 545 acaagcaaaatctggaactacaggagagtacctatttttcctggttcccatattttacaa 604
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 745 acaagcaaaatctggaactacaggagagtacctattattcctggttcccatattttacaa 804

                                                                       
Query: 605 ggtttatattaataatttcaaatatctgaatgttatcctcttggacagaccctccagatt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggtttatattaataatttcaaatatctgaatgttatcctcttggacagaccctccagatt 864

                                              
Query: 665 ttatataaaagtttattttatatgtttttattatg 699
           |||||||||||||||||||||||||||||||||||
Sbjct: 865 ttatataaaagtttattttatatgtttttattatg 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)