Query= MSMg01no271_m04.b1 MSMg01no271_m04.b1 CHROMAT_FILE:
MSMg01no271_m04.b1 PHD_FILE: MSMg01no271_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:42 2005
(281 letters)
>mm_chr10_53309045_53309725
Length = 681
Score = 460 bits (238), Expect = e-134
Identities = 272/294 (92%), Gaps = 20/294 (6%)
Strand = Plus / Minus
Query: 1 gtggtggtgggaaccaaactcagagtctctggaaaaccagcaagtattctccc-----ca 55
|||||||||||||||||||||||| ||||||||||||||||||| | || | ||
Sbjct: 451 gtggtggtgggaaccaaactcagattctctggaaaaccagcaagca--ct--cataaaca 396
Query: 56 ttgtcgtacctctccagctgcgttagtttagaatttttataaaaagtaaatttgctgtca 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgtcgtacctctccagctgcgttagtttagaatttttataaaaagtaaatttgctgtca 336
Query: 116 atgttttggtttctttctggacggttctactgctgacctgttgtcacgtggtcgtccggt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atgttttggtttctttctggacggttctactgctgacctgttgtcacgtggtcgtccggt 276
Query: 176 t-----------cagttttgaagtgaggaatggaagtctttccatttgttctctagtttt 224
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcctttaccttgcagttttgaagtgaggaatggaagtctttccatttgttctctagtttt 216
Query: 225 cagcttgactccctggggtccttaagttttcctgtgggtcttaaggatattttg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cagcttgactccctggggtccttaagttttcctgtgggtcttaaggatattttg 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no271_m04.g1 MSMg01no271_m04.g1 CHROMAT_FILE:
MSMg01no271_m04.g1 PHD_FILE: MSMg01no271_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:42 2005
(673 letters)
>mm_chr10_53147083_53148155
Length = 1073
Score = 1201 bits (621), Expect = 0.0
Identities = 660/673 (98%), Gaps = 2/673 (0%)
Strand = Plus / Plus
Query: 1 aatctgtagagcaggctggccttgaactcctagatccacctgccttgagtgctgggacta 60
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 203 aatctgtagagcaggctggccttgagctcctagatctacctgccttgagtgctgggacta 262
Query: 61 aaggtgtgctccaccaccactggattgatagtgaatgttcttaatcccattactcaagaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 aaggtgtgctccaccaccactggattgatagtgaatgttcttaatccctttactcaagaa 322
Query: 121 gtggaatcaagaagatcagaagtccaaggtcatcctcagctacataaagatcgagacgtc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtggaatcaagaagattagaagtccaaggtcatcctcagctacataaagatcgagacgtc 382
Query: 181 gggctgggctacatgacatcctattccacaatgaagaaacgagtaaatccacctcaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggctgggctacatgacatcctattccacaatgaagaaacgagtaaatccacctcaatgc 442
Query: 241 acactataaatgtgatttaacatctaaatttaaaacaaacaaacaaacctggtgtaaatg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 443 acactataaatgtgatttaacatctaaatttaaaacaaacaaacaaacctgggg-aaatg 501
Query: 301 gggctggagagatggttcagaagttagttaggcgtgagtggacccaagttcagttgctag 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 502 aagctggagagatgattcagaagttagttaggcgtgagtggacccaagttcagttcctag 561
Query: 361 catgtgccatgtgtctcactcagacagtttgtaagtctagtatcaggaatccaatgcctc 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 562 catgtgccatgtgtctcactcagacagtt-gtaagtctagtatcaggaatccaatgcctc 620
Query: 421 tggctgccacaggcattaaattcatgttcacataccttctctctctcctctctctctctg 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggctgccacaggcactaaattcatgttcacataccttctctctctcctctctctctctg 680
Query: 481 aaataaaacaaattaatttaatgtaaaaataaatgaaatgttttcaatacttgggagatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaataaaacaaattaatttaatgtaaaaataaatgaaatgttttcaatacttgggagatt 740
Query: 541 acccttttccttcttgtagtccaatccctagtcagcgcctatcccatgtgactacactat 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 acccttttccttcttgtagtccaatccctagtcagcgcctatcccatgcgactacactat 800
Query: 601 ggcaggcttagggttgggtagagcatcgaaagtaaagatgggggaatgtagttttcatta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcaggcttagggttgggtagagcatcgaaagtaaagatgggggaatgtagttttcatta 860
Query: 661 acaataaaacatc 673
|||||||||||||
Sbjct: 861 acaataaaacatc 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
