BAC Information

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BAC

Clone NameMSMg01-271N13
Chromosome10 (Build37)
Map Location 51,363,027 - 51,363,240
singlet/doubletsinglet
Overlap genenone
Upstream geneAscc3, Sim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a
Downstream geneRfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271N13.T7 (MSMg01no271_n13.b1)MSMg01-271N13.TJ (MSMg01no271_n13.g1)
ACCAG411286AG411287
length750754
length of high quality
(start - end)
316 (41 - 356)229 (432 - 660)
definitionCHROMAT_FILE: MSMg01no271_n13.b1 PHD_FILE: MSMg01no271_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:49 2005CHROMAT_FILE: MSMg01no271_n13.g1 PHD_FILE: MSMg01no271_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTGCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGAACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCATAAGTTGCTCCCCGCCCCCCCCCGACACATGCTCCACTATGTTCATA
GCAGCCTTACTTATAATAAACAAAAACTGGAAAGAACCTAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTTGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATA
CCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAGAATG
AAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAACAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCCCCATCAGATTTTTGTTCCACTGACTTG
AAGAAAAATTAGTTCCATATTTCACCATTGTATTGCACCACACTGGATCA
ACACTTTGCTCTAACTTAGGGCACTGTAGATCTCTGATTGGAATTAGTAA
CAGTCATGCATCCTTTGAAATTGTAAACAAACAAGCAGAGTAACATTCTG
AGTAAGTGAGCATATTGAGAGAGTGTTCATTCTGTTTGTCAGATTACCTA
AAAGGTTCTGTTAATCCACTCATAAATAAACACTATTAACGAGAGCAGGA
TTGACCCTTGTTTTCCCCCCCCCCCCCCAACTGGCTTTTGAGATACTGAC
TCCGCCTTTGCCGCCATTTGTGAAGAAAAGTAGCCTCACTAATCTTCCAC
CAGCAATTTCATCCTGTGCTTGATACACATAACCACTTAGCATTAGTCAA
ACAATTGTCAGGGAAATATCATTTCTCTTCCACCTTAGAGTAGAATGCAG
CTTAGGTCACTTCCTGTGAGGTTACACCCACCTACTTCACCACCAAAAGA
AGTACAAAATAGTAATTTTTGCTAAAGTTAACCAGTCACACAGTTTTAAT
GCTTACTCAGATCCTTCCAGTCTTCATTTTTTCAAAAAATAAATCCATTC
TTCTTAAGAATTTCTCCCAGTTACTTGGNTCTCTCTCTCTCTCTCTCTCT
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_n13.g1 MSMg01no271_n13.g1 CHROMAT_FILE:
MSMg01no271_n13.g1 PHD_FILE: MSMg01no271_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:49 2005
         (229 letters)



>mm_chr10_51362825_51363453
          Length = 629

 Score =  369 bits (191), Expect = e-107
 Identities = 212/227 (93%), Gaps = 13/227 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   cctcactaatcttccaccagcaatttcatcctgtgcttgatacacataaccacttagcat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cctcactaatcttccaccagcaatttcatcctgtgcttgatacacataaccacttagcat 262

                                                                       
Query: 63  tagtcaaacaattgtcagggaaatatcatttctcttccaccttagagtagaatgcagctt 122
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagtcaaacgattgtcagggaaatatcatttctcttccaccttagagtagaatgcagctt 322

                                                                       
Query: 123 aggtcacttcctgtgaggttacacccacctacttcaccaccaaaagaagtacaaaatagt 182
           |||||||||||||||||||||||||             |||||||||| |||||||||||
Sbjct: 323 aggtcacttcctgtgaggttacacc-------------accaaaagaactacaaaatagt 369

                                                          
Query: 183 aatttttgctaaagttaaccagtcacacagttttaatgcttactcag 229
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatttttgctaaagttaaccagtcacacagttttaatgcttactcag 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)