Query= MSMg01no272_d13.b1 MSMg01no272_d13.b1 CHROMAT_FILE:
MSMg01no272_d13.b1 PHD_FILE: MSMg01no272_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:19 2005
(670 letters)
>mm_chr10_123338168_123339236
Length = 1069
Score = 967 bits (500), Expect = 0.0
Identities = 534/548 (97%), Gaps = 7/548 (1%)
Strand = Plus / Minus
Query: 5 gaattcccaaccctatcacctccgctcaccacaccaaaatcaggagctattgattcattt 64
||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 547 gaattcccaacccta-catctccactcaccacaccaaaatcaggagctattgattcattt 489
Query: 65 aattaaaaaagatctgacatggaaatactacattgagatgaatcccatatgaacaactct 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aattaaaaaagatctgatatggaaatactacattgagatgaatcccatatgaacaactct 429
Query: 125 gtgaagatttctattttttgccttgtacctcagagaaagagttgtttaaatccttcaact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtgaagatttctattttttgccttgtacctcagagaaagagttgtttaaatccttcaact 369
Query: 185 gaaaatgagccacgatgcaggctcagccaccaaaataacccaaggggaaagagaaaagga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaaatgagccacgatgcaggctcagccaccaaaataacccaaggggaaagagaaaagga 309
Query: 245 gcaatggaaagggaatacaagaaaatgagtggaaccttgtgtgaaataagagtatgtaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatggaaagggaatacaagaaaatgagtggaaccttgtgtgaaataagagtatgtaac 249
Query: 305 aacagccttcaaatctaacctaggagatacaaaagccaaataggaaataaagaatgaagt 364
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 248 aacagccttcaaatctaaccaaggagatagaaaagccaaataggaaataaagaatgaagt 189
Query: 365 aaaaat----taa--ataaataaataaataaataaataaataaataaataaataaataaa 418
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaaaaaaaaataataataaataaataaataaataaataaataaataaataaataaataaa 129
Query: 419 ataaagaaagaaattatgaaaatatggccaaatgacacaatgatcactaaaatctctcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ataaagaaagaaattatgaaaatatggccaaatgacacaatgatcactaaaatctctcaa 69
Query: 479 ggtttctactcaaggttttatgacacggagtactgacaggttttctctgccttagtatcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ggtttctactcaaggttttatgacacggagtactgacaggttttctctgccttagtatcc 9
Query: 539 tataccaa 546
|||||||
Sbjct: 8 aataccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_d13.g1 MSMg01no272_d13.g1 CHROMAT_FILE:
MSMg01no272_d13.g1 PHD_FILE: MSMg01no272_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:19 2005
(291 letters)
>mm_chr10_123175904_123176594
Length = 691
Score = 524 bits (271), Expect = e-153
Identities = 286/291 (98%)
Strand = Plus / Plus
Query: 1 tatggcatttcatctacttcttagtgaaactaagactttacagaagtctaccgtgaacgt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tatggcttttcatctacttcttagtgaaactaagactttacagaagtctacagtgaacgt 260
Query: 61 tgggtcctgaagacttcatccgctgtgaactaacgcttggctcacaacacttctgaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtcctgaagacttcatccgctgtgaactaacgcttggctcacaacacttctgaggga 320
Query: 121 agggggcgctgttctccatggagctgggatagagttggttttctggggtgacaccagaga 180
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggggcgcagttctccacggagctgggatagagttggttttctggggtgacaccagaga 380
Query: 181 ctgtcacctttaaggttccttgcttcagctgtgactgttcttgtgtctgaagctgcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcacctttaaggttccttgcttcagctgtgactgttcttgtgtctgaagctgcttcc 440
Query: 241 caagctgactgtcctgtcattgatgtgctcctggctcttttgctccttgtc 291
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 caagctgactgtcctgtcattgatgtgttcctggctcttttgctccttgtc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
