BAC Information

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BAC

Clone NameMSMg01-272E04
Chromosome10 (Build37)
Map Location 31,018,591 - 31,169,541
singlet/doubletdoublet
Overlap geneHddc2, Tpd52l1, LOC100041294
Upstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448
Downstream geneIbrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272E04.T7 (MSMg01no272_e04.b1)MSMg01-272E04.TJ (MSMg01no272_e04.g1)
ACCAG411594AG411595
length735736
length of high quality
(start - end)		340 (47 - 386)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no272_e04.b1 PHD_FILE: MSMg01no272_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:22 2005CHROMAT_FILE: MSMg01no272_e04.g1 PHD_FILE: MSMg01no272_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,169,231 - 31,169,541)(31,018,591 - 31,018,877)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGTGGTCTCTCCCCAATTCCTTTGGCCCTTCTCAGTACAGCAC
AAGGCAGGGAGGTAAAGCAATCTACACACTAATTACCTTCCCCTTTTTGC
AGCATATCTTCTCTCCTTGAGCTATTCTGTGGCTCTACAGCTACTTCTTC
ACCAGCCCCCTCAGGGTCTCCTTGGCTTCTAGCAGGGTCTCTCGCCCTCT
AACTTCACACCCCAAATGGTGCTCAAGGAAAGTCCCAGTTGTTTTTTCAC
ACTGCTTAAAAGGTTTGAAAATTTATATATGCACAAATACATCACACACA
CACACACACATTTTTTTTTTTTCCCCCCCCCCCCCACACAGANATATGCA
CACACTCTCTGTCCATGACTGAAGGTGAAGAGAAAGACTGCCATAGAACT
GTCAGGTCCAGGCCTTCTCTAGGACAGATGGTGGGACACACAAACAGACT
CATGTCGGCTTCTTGAATCTCTGCCTCCTCCAGTTTCTATGCCCTCTCCA
ATTCTTCCACATTCAGGGGTATAAATACTTGCTCTTCTTTCATTCCTCTC
TCCCTACATCTATCTACCTGAATGACTACTTTTTCATCTTAGCTGGAGAA
TCAGCGTCTTTCATCTTTGCTGTGGACAAAACCTATCCGTATTCTCAGTC
TTAAGATAAAATCTTTATTACCCACAGAGCTTTCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGGGCCTCTCTTACTTAGAAC
AAGGAATCTGTGCTTCACAGTTAAGCAGTGACTCCGTGTAGCTCTCTCAC
TCACATCCCAGCAAATGACTTCAACCCTGGGGGCCTTTGGTAGAATGACA
TTTCTCCCCATGTAACAAGGGTTCTCTTCATTTTATAACTTTGAGATTAC
CAGAATAAAAATGTGGCTATTTGAAAACGTATTGTGATGTCTTAGTCTGT
ATCCAAATAAAATTTTGACCTTTATTATATGCAGTATCCTATACTTACTG
ATTTCTATATGAATTTTTTTCACCCNAACGGGCTCTTCAACCCTGTAACT
ACTTGAAAAGACCATTTGTAAGGACGATAGAATATACTCCTGGTACTCTA
GGCATTCGTATACTTTTTTCTAAATATAATCACATGGGAGTGCTGTTACC
ATTACAGGTGATAGGCAAGAAGAATGATGGGAGAGTGACAAAGGAAGAAG
GACAGAAGCAGAAATAGTGAGAGTATAAATATTTACTCAATCCAGTTAGG
AAACAGGACATTTAATATAGTCATGCTCCAGAGATGAGAAGGCAATGGTG
ATGACATAGTGCCACCTCGTGGTTGACTCTCAAAACTACATGTAGTTTCT
TGGTGCTGCCCTTGAAAGTTGCAGATAGTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_e04.b1 MSMg01no272_e04.b1 CHROMAT_FILE:
MSMg01no272_e04.b1 PHD_FILE: MSMg01no272_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:22 2005
         (340 letters)



>mm_chr10_31169028_31169767
          Length = 740

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgtggtctctccccaattcctttggcccttctcagtacagcacaaggcaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcatgtggtctctccccaattcctttggcccttctcagtacagcacaaggcaggg 455

                                                                       
Query: 64  aggtaaagcaatctacacactaattaccttcccctttttgcagcatatcttctctccttg 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aggtaaagcaatctagacactaattaccttcccctttttgcagcatatcttctctccttg 395

                                                                       
Query: 124 agctattctgtggctctacagctacttcttcaccagccccctcagggtctccttggcttc 183
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 394 agctattctgtggctctacagctacttcttcactagccccctcagggtgtccttggcttc 335

                                                                       
Query: 184 tagcagggtctctcgccctctaacttcacaccccaaatggtgctcaaggaaagtcccagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tagcagggtctctcgccctctaacttcacaccccaaatggtgctcaaggaaagtcccagt 275

                                                                       
Query: 244 tgttttttcacactgcttaaaaggtttgaaaatttatatatgcacaaatacatcacacac 303
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 274 tgttttttcacactgcttaaaaggtttgaaaatttatagatacacaaatacatcacacac 215

                      
Query: 304 acacacacaca 314
           |||||||||||
Sbjct: 214 acacacacaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_e04.g1 MSMg01no272_e04.g1 CHROMAT_FILE:
MSMg01no272_e04.g1 PHD_FILE: MSMg01no272_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:22 2005
         (288 letters)



>mm_chr10_31018391_31019078
          Length = 688

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgggcctctcttacttagaacaaggaatctgtgcttcacagttaagcagtgactccg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgggcctctcttacttagagcaaggaatctgtgcttcacagttaagcagtgactccg 260

                                                                       
Query: 61  tgtagctctctcactcacatcccagcaaatgacttcaaccctgggggcctttggtagaat 120
           ||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 261 tgtagctctttcactcacatcccagcaaatgacttccaccctggaggcctctggtagaat 320

                                                                       
Query: 121 gacatttctccccatgtaacaagggttctcttcattttataactttgagattaccagaat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gacatttctccccatgtaacaagggttctcttcattttataattttgagattaccagaat 380

                                                                       
Query: 181 aaaaatgtggctatttgaaaacgtattgtgatgtcttagtctgtatccaaataaaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaatgtggctatttgaaaacgtattgtgatgtcttagtctgtatccaaataaaatttt 440

                                                          
Query: 241 gacctttattatatgcagtatcctatacttactgatttctatatgaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacctttattatatgcagtatcctatacttactgatttctatatgaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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