BAC Information

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BAC

Clone NameMSMg01-272G05
Chromosome10 (Build37)
Map Location 99,274,821 - 99,275,103
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
Downstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272G05.T7 (MSMg01no272_g05.b1)MSMg01-272G05.TJ (MSMg01no272_g05.g1)
ACCAG411687AG411688
length782732
length of high quality
(start - end)
42 (304 - 345)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no272_g05.b1 PHD_FILE: MSMg01no272_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:32 2005CHROMAT_FILE: MSMg01no272_g05.g1 PHD_FILE: MSMg01no272_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGTGACTANCTTNNGGGGGGCCGGCCGGGCNCCCCTAGGCNCCAA
CATCATAATTGCGGCGCTAAACGAGTCCTATTTCCGAAAGAANGNGGAAN
NNGNNTTTTACAAAGAAAGAGGGGAGNAGANNGGNNNNNNNGGGNNAGAA
GAANNGGNGGATTTCCCCCNCNANAAGGNANAGNAAGAAAGGNGNNNAAG
NNNANAAANAGAANNAAGNNGGGGNNNAGANNNNAGGNANNNAGGGGNNG
GNGAGNAGNNNNGAAGGNAAAGAAGGGAAAANNNNGGAANNNANNATTTT
TATGAAGAAGTAANAAAAATGGNTAGATTTAAATANATATAAAANAGTGG
ANNNTGGANNATTTTTAGTGGTTTANAGNNAGGAAGNANNNAAAGGAAGA
GAATTTTTTTTTGCCTCCCGCACCCGAGGNATACAGNCNATCACGGNTGG
AAAGGCAAGACGCTCATAAAAAGAAAAAGGAGATTGTGGGGGAGGGGAGA
GGCTTATATCATCATATCTTAGTGGAGCAGAATGCAGATAGCATGGCAGG
GGGCAGGGGTTAGATATCACCTTTAAAAGCTTGTCACTCTGTTAGGTTCA
AATCCTGTAGGCTGCATAGGCTTTCATAGATAGTACAGTCAGCTTGGAGA
GCGAGCTATCTAGATTTTTGTGGGGTCGGAGGAAAGGGCAAAGGAAAGAA
AAAGGTTTTTTTTTTTGTTGGGAGTACGCGTATTATAAATGGCATTTTGG
TGAACGCGTGGCGTTTTGTGTAAATTTTAATC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGTTGGATAGAGCAACTCAA
TGTCTGTTATAAACACAGGTTGCTAAAGGGAGAGGCATTAGTAATAATGG
CATGCACAGCGGGAACCCCTGCACACAGCACCATAAATCTGACCAACTAA
TGTCAACCAGACACAAAACAGCAGCAGAAACAAAGGACTTTAAAAAAAAA
AACTTGCTGAAAAAGGGTCAGTGGGGAACCATGAATACTTCGAAGGAATA
GTAATGGACGGGGCCAGACAGTCTTTCTACATGACCAGAACATTACAGTT
TAGAAGCACTCATTTATTTTTTGACCCACCCCACGTTAAAATGCATTCTG
GGTGTTTACTGGAAGGTGGTCGATGTTAATCCTTTTAAATCTCTGTTCAG
CATTAAAGCTCAAGAGAACCCCTTCATGTGGCGGCAAGGAGTCATTTTTC
AAAGGCGGTGTAATGGAAGGATAATCCTAATATTTGTTGCTTGATTTTTG
AGTCTCCATTCAGCCCACGTGAAATTGGGACTCACCTTTGCAGGTTGATT
ATGAAACATTATAAACCTCATAATTTAGTCTAAGCATACATAAACACAAT
TCCCAATTACCCATCACGTGGGGCTGAACAGTACGAATGTGAAGCAAGGT
TCAACTCCAATTATAATGTCGCCGTTTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_g05.g1 MSMg01no272_g05.g1 CHROMAT_FILE:
MSMg01no272_g05.g1 PHD_FILE: MSMg01no272_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:32 2005
         (289 letters)



>mm_chr10_99274621_99275306
          Length = 686

 Score =  491 bits (254), Expect = e-143
 Identities = 277/286 (96%), Gaps = 3/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagagttggatagagcaactcaatgtctgttataaacacaggttgctaaagggagaggc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagttggataaagcaactcaatgtctgttataaacacaggttgctaaagggagaggc 260

                                                                       
Query: 61  attagtaataatggcatgcacagcgggaacccctgcacacagcaccataaatctgaccaa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagtaataatggcatgcgcagcgggaacccctgcacacagcaccataaatctgaccaa 320

                                                                       
Query: 121 ctaatgtcaaccagacacaaaacagcagcagaaacaaaggactttaaaaaaaaaaacttg 180
           ||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 321 ctaatgtcagccagacacaaaacagcagcagaaacaaaggactt---aaaaaaaaacttg 377

                                                                       
Query: 181 ctgaaaaagggtcagtggggaaccatgaatacttcgaaggaatagtaatggacggggcca 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 ctgaaaaagggtcagtggggaaccatgaatatttcgaaggaatagtaatggacggggcca 437

                                                         
Query: 241 gacagtctttctacatgaccagaacattacagtttagaagcactca 286
           ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 438 gacagtctttctacatgaccagaacattacagtatggaagcactca 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)