BAC Information

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BAC

Clone NameMSMg01-272M10
Chromosome10 (Build37)
Map Location 38,314,067 - 38,314,359
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272M10.T7 (MSMg01no272_m10.b1)MSMg01-272M10.TJ (MSMg01no272_m10.g1)
ACCAG411964AG411965
length724730
length of high quality
(start - end)
544 (46 - 589)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no272_m10.b1 PHD_FILE: MSMg01no272_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:00 2005CHROMAT_FILE: MSMg01no272_m10.g1 PHD_FILE: MSMg01no272_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGCATTCTCCTTTAGGCCTTTTTTCTTGTTTATCTTCTTTGGGT
TTTTAAAGGTATATCATGTGTATTCTGCACTTTTAGGGTGATATCCACTT
ATCAATGAGAACATACCATATGTGTCCTATTGGATCTGGGTTACCTCACT
CAGGATATTTTCTAATTTTATCCATTTGCCTGCAAAGTTCATGATGTCCT
TTTTAAATAGCTGAATGATATGCCATTGTGTAAATGGACCACATTTTCTA
TATTCATTCTTTGCTTGAGGGACATCTTGGTTGTTTCCAGTTTCTGGCTA
TTATGATAAAGCTGCTATGAACATAGTTGAACAAGTGTCCTTTTGGGATA
GTGGAGCATCTTCTGGGTATATGCCTAGGAGCAGTATAGTTGGGTCTTCA
GATAGAACTATTTCGAATTTTCTGGGAAACCACCAGATTGATTTCCAGAG
TTGTTATACAAGTTTGCAATCCCAGCAGCAGTGGAGGAGTGTTCCCTTCT
TTTCCAGATCTTTCCGGGCATGTGCTAGCACTTGAACTTTGATCTTAGCC
ATTCTGATTGGTGTAAGGTGAAGTCTCATGTCTGTTTTGGATGCCGAGAA
TCTCCTTAAGTTCCTCTCGGCCATTTGACATTCCTCTTGCTGAGAATTCT
GTTTAGTTCTGGACCCCTCTTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAGGGGTTCTACTGACAATAC
TTTTCAGATGTGCAACTTGGAAGGAAAATGGAAGAGAGAGTGAGAACCTG
TACCTGCTCAGAAAGAAACACTCAGGTTTGCTTTTAGAGCTGGTAAGTCA
AGAGGTGGTATAGTTTCCCTGCCGTTGGTTCCTATTTCCTCCAAGTTTGG
ATTAGTTTTATGTATTTTCCTTTTGCACACACATACACACGTACGCACAT
AGTGTGTGTGTGGGTGTAGGTGTATGTATATATACAAAGCTAGAATATAA
GCCAGCATATTCATTTTTTTTTCCCCCCCCCCCCACTGTATTTGCCCTAA
ATGTTGTGACAAATCTGTCCCTGATTCAAACATTTATACTTCAAACCGAG
TGTCAATCAATTCAAAATAAGTGCATTAAAATAAAATAAGCTTGTACTAA
TTTTCTTCCATTCCTCTCAGAAATATGATTTTTATTATAATTACCCGCTT
AATGATAATTACATTTGTGTGACTCTGNGCGTAACGAGGATTTGTGTTTG
TTACCGCTAGGTTGAGACATATACTCCCTTCTACGAAAATATGAAACCCT
AGGCGATTATTGCCTCCATTGTAGTTTACATTATAACCATTACATTACCG
CTGAATAAAGTCTACTTCTATTCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_m10.g1 MSMg01no272_m10.g1 CHROMAT_FILE:
MSMg01no272_m10.g1 PHD_FILE: MSMg01no272_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:00 2005
         (287 letters)



>mm_chr10_38313867_38314559
          Length = 693

 Score =  485 bits (251), Expect = e-141
 Identities = 280/293 (95%), Gaps = 6/293 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttaggggttctactgacaatacttttcagatgtgcaacttggaaggaaaatggaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttaggggttctactgacaatacttttcagatgtgcaacttggaaggaaaatggaagag 260

                                                                       
Query: 61  agagtgagaacctgtacctgctcagaaagaaacactcaggtttgcttttagagctggtaa 120
           ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 261 agagtgagagcctgtgcctgctcagaaagaaacactcgggtttgcttttagagctggtca 320

                                                                       
Query: 121 gtcaagaggtggtatagtttccctgccgttggttcctatttcctccaagtttggattagt 180
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaggaggtggtatagtttccctgcccttggttcctatttcctccaagtttggattagt 380

                                                                       
Query: 181 tttatgtattttccttttgcacacacatacacacgtacgcacatagtgtgtgtgtgggtg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tttatgtattttccttttgcacacacatacacacgtacacacatagtgtgtgtgtgggtg 440

                                                                
Query: 241 t------aggtgtatgtatatatacaaagctagaatataagccagcatattca 287
           |      ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtgtaggtgtatgtatatatacaaagctagaatataagccagcatattca 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 693
Length adjustment: 9
Effective length of query: 278
Effective length of database: 684
Effective search space:   190152
Effective search space used:   190152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)