BAC Information

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BAC

Clone NameMSMg01-274A05
Chromosome10 (Build37)
Map Location 126,633,809 - 126,634,496
singlet/doubletsinglet
Overlap genePip5k2c
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3
Downstream geneKif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A05.T7 (MSMg01no274_a05.b1)MSMg01-274A05.TJ (MSMg01no274_a05.g1)
ACCAG412863AG412864
length736757
length of high quality
(start - end)
692 (43 - 734)167 (73 - 239)
definitionCHROMAT_FILE: MSMg01no274_a05.b1 PHD_FILE: MSMg01no274_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:29 2005CHROMAT_FILE: MSMg01no274_a05.g1 PHD_FILE: MSMg01no274_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTCCCATAGCGCTGGTACCCCAAGAGGCCCACTAAAGTTAACAGATG
GAGGAGCAAGAGCATAATGCACGACAGACACACCATCCCACTCCCACTCT
GGCCGCCACAAGGTTGGCGACTATTTTCCCGCTCCCATGTCTACCCCACA
ACTCCAAGTCCACAGTCATCTTAGAACACCCCCCCCACACACACACACAC
ACATACTCAGGAGCCCAACACCTTGAAGACCAATATTTTTCAGTTGGACT
CTGTAACTCTTAAACACAGGATGGGTTACTCAGTTTTTTAAAAAACAAAA
ACTTCTGTGAATGACTTAGATCAAATAATTTATTTTATTGTGATATCGGG
AGTAAATATACATATTTTATTAACAAAACAGATGGAAAACGGAAGCAGTA
AGTGAAGATGGCAACACTGCCCACGACCACAGCCGCACGGTGAGACCCCA
GTTGTTAAGGGACCGGAGTCACTTATTGCATTCAACAGGGGAAAGGTTGC
TTGAGGGATGGGAGACTCAGCAGGTCCCACCCACCCCAACCGGGCACCAT
CTTGCTGCTTCCTTTGGTGAGGGAGGCGGGCTTCTCCCTGAGGACCTCAT
GGACACACAGCAAAGCAGCTCCTTGCCTTCAATGCACACCCCACCTCCAG
AGCGCCAAACAGCGAAGATGAGTGGCTTGCTTCCAA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGCTAGCCTGAGCTATAGAATGAGAT
CCTGTCTCAAAGCAAACAACCAAACAAACAAACAAACAAACAAACCAGAC
AGTCTTTCCAGAGTGTGTTATATGACAGAGCTGATGACATGATTGCTGAT
ATAGTCTTTTCCTTTCTCTCCTTTAAACAATTTTAAATTTAAATTTTTNA
ATTTTANNTGTGTNNAATGAAGTCTTTTTGGTCTGGGCATGGTNTAAGNT
GCAGCCGGCTTTTGGGNNTTTTGGACAAAGTGGGCCCCCCCNCGGGGGGG
GGAAAAAAAAAANNTTTTCCAAACAAAAAAAAGGGGGGCCAAAAAACCCC
CGGGGAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGTTTTTTTTTTTTACG
CGCCCCCCCCCCCCCCGCCCCNNNNNNCAGTCATTAATAATACTCCAACA
CCAAACTATAATCATTAATGTTTTCACCTTTTCCACTCTCTTTCCCTTTT
TTTCTTCCTTTTTTCCTCGCCTTTGTTACCCCCCTTACCCCGCTTCTATT
TATTTTCCATTCCTTCTTTTTTTCCCCCTTTCATATTTCACCACCCTCCC
CCCTTCATTCTACCCCCCCTTTTTTTTTCCTTTTCCCCTCCTATATCATC
ACAACATGGTTATCTTNNNAATAACCGCGCTCGTNCCCCCCTCCTCCCCT
ACAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a05.b1 MSMg01no274_a05.b1 CHROMAT_FILE:
MSMg01no274_a05.b1 PHD_FILE: MSMg01no274_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:29 2005
         (692 letters)



>mm_chr10_126633605_126634696
          Length = 1092

 Score = 1255 bits (649), Expect = 0.0
 Identities = 679/689 (98%), Gaps = 2/689 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcccatagcgctggtaccccaagaggcccactaaagttaacagatggaggag 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcccacagagctggtaccccaagaggcccactaaagttaacagatggaggag 264

                                                                       
Query: 65  caagagcataatgcacgacagacacaccatcccactcccactctggccgccacaaggttg 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagagcataatgaa-gacagacacaccatcccactcccactctggccgccacaaggttg 323

                                                                       
Query: 125 gcgactattttcccgctcccatgtctaccccacaactccaagtccacagtcatcttagaa 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 gcgactattttcccgctcccatgtccaccccacaactccaagtccacagtcatcttagaa 383

                                                                       
Query: 185 caccccccccacacacacacacacacatactcaggagcccaacaccttgaagaccaatat 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caccccccccccacacacacacacacatactcaggagcccaacaccttgaagaccaatat 443

                                                                       
Query: 245 ttttcagttggactctgtaactcttaaacacaggatgggttactcagttttttaaaaaac 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 ttttcagttggactctgtaactcttaaacataggatgggttactcagttttttaaaaaac 503

                                                                       
Query: 305 aaaaacttctgtgaatgacttagatcaaataatttattttattgtgatatcgggagtaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaaacttctgtgaatgacttagatcaaataatttattttattgtgatatcgggagtaaa 563

                                                                       
Query: 365 tatacatattttattaacaaaacagatggaaaacggaagcagtaagtgaagatggcaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatacatattttattaacaaaacagatggaaaacggaagcagtaagtgaagatggcaaca 623

                                                                       
Query: 425 ctgcccacgaccacagccgcacggtgagaccccagttgttaagggaccggagtcacttat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgcccacgaccacagccgcacggtgagaccccagttgttaagggaccggagtcacttat 683

                                                                       
Query: 485 tgcattcaacaggggaaaggttgcttgagggatgggagactcagcaggtcccacccaccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcattcaacaggggaaaggttgcttgagggatgggagactcagcaggtcccacccaccc 743

                                                                       
Query: 545 caaccgggcacc-atcttgctgcttcctttggtgagggaggcgggcttctccctgaggac 603
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 744 caaccgggcacccatcttgctgcttcctttggtgagggaggtgggcttctccctgaggac 803

                                                                       
Query: 604 ctcatggacacacagcaaagcagctccttgccttcaatgcacaccccacctccagagcgc 663
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 804 ctcatggacacacagcaaagcagctccttgccttcaatgcccaccccacctccagagcgc 863

                                        
Query: 664 caaacagcgaagatgagtggcttgcttcc 692
           |||||||||||||||||||||||||||||
Sbjct: 864 caaacagcgaagatgagtggcttgcttcc 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)