BAC Information

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BAC

Clone NameMSMg01-274I09
Chromosome10 (Build37)
Map Location 81,631,288 - 81,631,582
singlet/doubletsinglet
Overlap genenone
Upstream geneEef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
Downstream geneLOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274I09.T7 (MSMg01no274_i09.b1)MSMg01-274I09.TJ (MSMg01no274_i09.g1)
ACCAG413225AG413226
length740737
length of high quality
(start - end)
188 (125 - 312)294 (427 - 720)
definitionCHROMAT_FILE: MSMg01no274_i09.b1 PHD_FILE: MSMg01no274_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:04 2005CHROMAT_FILE: MSMg01no274_i09.g1 PHD_FILE: MSMg01no274_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNCAGCGGGCGGCGGA
ANNCANACTGTGACAGNCACCGAAGGNGNGCAANCAANGNGGNAAAGCCA
ATGCAAGNGGAAGTATTCTTCGAAATCATGAAAAACGTCATGCTATTGAG
AAACCTTATAAATGTAATCAGTGTGCTAAAGCCTTTGCATGTCTCAGGCG
TCTTCAAATACATGAAAGGAATCATACTGGGAAGAAACTTTATGAGTGTA
TTCAATGTGGGAAACCCTTTACAAGTCAAAATAGTCTTCAAATACACAGG
AGAACTCATACCGGTTTTGTATTTATATAAATGCAGNCAANGNAGCAAAG
CCNTTGCATGTTTTATTACCCCGCACACACATGAAAGAAATCATTCTGGA
GAAAAACTATGAATAATCATTGTGAAAAAACATTCGCATATTCGAGTAGA
CTTCATAATCACAAAAAATGTCATTCTGAAGAGAACCCCTATGGATACAA
TTGATTCAGTAAAGCACGTTAGTGTAAACTTCAGATACATTAAAGATATA
AATTGGAGAGAAACCTGACAAATGTAATCAATGTGATACTGCCTCTGCGT
GTTACTGGTTTCTTTAACGTTATGAAAGAATTTCTACTGGAAAGAAACTT
TTTGAATCTAATAAGCGCAGTAAAGACTTACATATCACACACATTTTCCT
ACTGAGACATCCCATCGGTGCTTATGTAAGATTAATGCAG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACCCACGAAATTCATGGCTTAATAGAGCCCAGCCTTTTATT
GGGTGTTGCAAATGTACCCGGAACTATGCCCTGATCATGACTTCTGCATT
TGCAAACAGAGGGGAGGTGCCCAGAAGGATGTTAAAAGGTTTCCAATTTT
TGTCTACACTTGAAGTTACCAGTGAACAGTTAGCTAATAAACTTCAGGTG
ATTGATAAATGATCTGATTAGTGTTCAATTGGGATGCACAGACCACAGCA
ACCAAAAATATAGTTAATAAGTGAATTTCCTTTTAGCAACCAAATTATGT
AGTTATTTTTTTTCACCGACACCACACCAGCTGGGCAAATTTTTGTGGCC
CTGCCTAACTGGTTGGTTTTTAGAAATTTTTTGTTTTTGTTTTTTGATAT
TTGTTTTCTGGATGAGAATGGGATAAAAAGTATGAGTTAATCCTGTTTGC
CTCCAATATAAATTGTTATTCTCTTGAGAACATGGAACCATAAAGCCTGA
TACCATGTTTTAAAATTTATTTTTGAGATTATAATTACTTCACTTGGTCT
TTCGCTTTCATCTCTCCTGACCCTCTATATAACCTCTTTGCTTTCAAATC
CATGGCCTCCCTTTGCTTTGTTTCTCCTACTTGAATTTGACCTAAGGTTA
TCTACAGGACTTTCCAGTTCTGAGGTAAAGAGATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_i09.g1 MSMg01no274_i09.g1 CHROMAT_FILE:
MSMg01no274_i09.g1 PHD_FILE: MSMg01no274_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:04 2005
         (294 letters)



>mm_chr10_81631242_81631937
          Length = 696

 Score =  551 bits (285), Expect = e-161
 Identities = 292/295 (98%), Gaps = 2/295 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tttttgtttttgttttttgatatttgttttctggatgagaatgggataaaaagtatgagt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttttgtttttgttttttgatatttgttttctggatgagaatgggataaaaagtatgagt 282

                                                                       
Query: 62  taatc--ctgtttgcctccaatataaattgttattctcttgagaacatggaaccataaag 119
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taatcctctgtttgcctccaatataaattgttattctcttgagaacatggaaccataaag 222

                                                                       
Query: 120 cctgataccatgttttaaaatttatttttgagattataattacttcacttggtctttcgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 221 cctgataccatgttttaaaatttatttttgagattataattacttcatttggtctttcgc 162

                                                                       
Query: 180 tttcatctctcctgaccctctatataacctctttgctttcaaatccatggcctccctttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tttcatctctcctgaccctctatataacctctttgctttcaaatccatggcctccctttg 102

                                                                  
Query: 240 ctttgtttctcctacttgaatttgacctaaggttatctacaggactttccagttc 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ctttgtttctcctacttgaatttgacctaaggttatctacaggactttccagttc 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 696
Length adjustment: 9
Effective length of query: 285
Effective length of database: 687
Effective search space:   195795
Effective search space used:   195795
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)