BAC Information

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BAC

Clone NameMSMg01-275C01
Chromosome10 (Build37)
Map Location 102,763,233 - 102,856,091
singlet/doubletdoublet
Overlap geneLOC100043277, 6430590A10Rik, Slc6a15
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
Downstream geneEG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C01.T7 (MSMg01no275_c01.b1)MSMg01-275C01.TJ (MSMg01no275_c01.g1)
ACCAG413665AG413666
length739738
length of high quality
(start - end)		670 (70 - 739)664 (75 - 738)
definitionCHROMAT_FILE: MSMg01no275_c01.b1 PHD_FILE: MSMg01no275_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:48 2005CHROMAT_FILE: MSMg01no275_c01.g1 PHD_FILE: MSMg01no275_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,855,726 - 102,856,091)(102,763,233 - 102,763,896)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCTTTGATTCACCGAAAGTTCCAGGAAAAAGAGTGGAATTCCTATCA
CCAGAAGTAGTATTAAATACGGCCAAAGATATGCACCTAGAGAAACAAGA
ACAAACAGAATGGGTCATATTTTCAATAGTCACAGTAGAGTATACATTGA
CCAGAATCATTTCATAAAAGACACTATTTGAAGTTTTTTGTTTTGTTTTG
TTTTGTTCTTTATGATACAAAGAGAAGTCTTTGAAGAAAACATAACTGAC
CTTTAAACTTTCTAAACTTTGAATCCTGTATTAGACTGCTCTAGGAAGTC
CCTCAGGGCAGTTAGGTGACTCCATGGGCAACCCCATACTGCATGGGTCT
TATGACCTAAGTTTGAGTCCTTGAACCCACAGTGGAAGAAGAAAATTGAC
TCCTGAAATCTCCTCTGAACTCTGTATGCATATTCCCCCAATACACATAT
GCACCATACACAAACACACACATACAAAATAATAGCAAAGTTTAAAAGTT
TTAAATTATAGTTCTTTGTAGAATAAATCTTATTAAAAGGCACTTATAAA
TAACCCGACTTTTTTTAAAAAAGAGTTATTTATTTTATGTATATGAGTAC
ACCGTCACTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACA
GATGGTTGTGAGCCACCATGTGGTTGCTGCGAATTGAAN

AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGTCTTATTTGAATTTCATCTAAG
CAGATTATTTTATGCATTGGCACATTTTTTCATGTCAATTAAGAAAATAA
ACATAAAACATTTTGAAAACTTAAGTACATATTGAATATTAATTATTTGG
CAGTTAATCAGCCACCAGCCGTGATACATTTTAATCCTTTCTCTTTTGTT
TCCCTCAGTTCCAAATTTCTGAACTTCATCATCAGCTTTTTTTTGACAGA
CTGTTCCTTGACTCTTTACCTGCATATTTCTCATCACTAATGAGTATATT
TGATAGCTGCTGTGTTTCCAGAGTTTTCTATGCACTGTATTTTAGAGAAG
TCTAGCTTGTAATCTTTGTGTAAAAATATGTAATACACTTATGAAAATAT
ACTGAGCCCAGGCGTATTTTAGAGAATACATACTGTATCTACAAGTTAGC
ATTCCATTTTTTCAAGCTCTGAAATGTTTACTGAGAATTTTGCCTGTTGC
TTAGAACACAGTACTGCTCCCCTTTGCTTTTGCAGGCAGCCGAAGTGATT
TTTCATTGCAAGAATAAAAGCGTGTTTTGAATTATAATAAGCATTTCAAG
AAAAAAAAGGTGTCAGATACTCAGATACTGTAATTCTCAAGAATAAAAGA
AATTAATCTACTTCTGTCCAGAATTAATAATCTTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c01.b1 MSMg01no275_c01.b1 CHROMAT_FILE:
MSMg01no275_c01.b1 PHD_FILE: MSMg01no275_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:48 2005
         (670 letters)



>mm_chr10_102855726_102856795
          Length = 1070

 Score =  700 bits (362), Expect = 0.0
 Identities = 365/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttccaggaaaaagagtggaattcctatcaccagaagtagtattaaatacggccaaaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 366 agttccaggaaaaagagtggaattcctatcaccagaagtagtattaaatacggcaaaaga 307

                                                                       
Query: 61  tatgcacctagagaaacaagaacaaacagaatgggtcatattttcaatagtcacagtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tatgcacctagagaaacaagaacaaacagaatgggtcatattttcaatagtcacagtaga 247

                                                                       
Query: 121 gtatacattgaccagaatcatttcataaaagacactatttgaagttttttgttttgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtatacattgaccagaatcatttcataaaagacactatttgaagttttttgttttgtttt 187

                                                                       
Query: 181 gttttgttctttatgatacaaagagaagtctttgaagaaaacataactgacctttaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gttttgttctttatgatacaaagagaagtctttgaagaaaacataactgacctttaaact 127

                                                                       
Query: 241 ttctaaactttgaatcctgtattagactgctctaggaagtccctcagggcagttaggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttctaaactttgaatcctgtattagactgctctaggaagtccctcagggcagttaggtga 67

                                                                       
Query: 301 ctccatgggcaaccccatactgcatgggtcttatgacctaagtttgagtccttgaaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ctccatgggcaaccccatactgcatgggtcttatgacctaagtttgagtccttgaaccca 7

                 
Query: 361 cagtgg 366
           ||||||
Sbjct: 6   cagtgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_c01.g1 MSMg01no275_c01.g1 CHROMAT_FILE:
MSMg01no275_c01.g1 PHD_FILE: MSMg01no275_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:49 2005
         (664 letters)



>mm_chr10_102763033_102764096
          Length = 1064

 Score = 1253 bits (648), Expect = 0.0
 Identities = 660/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtcttatttgaatttcatctaagcagattattttatgcattggcacattttttcatg 60
           |||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||
Sbjct: 201 agtgtcttatttgaatttcatctaagcaaattattttatgcattggtagattttttcatg 260

                                                                       
Query: 61  tcaattaagaaaataaacataaaacattttgaaaacttaagtacatattgaatattaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaattaagaaaataaacataaaacattttgaaaacttaagtacatattgaatattaatt 320

                                                                       
Query: 121 atttggcagttaatcagccaccagccgtgatacattttaatcctttctcttttgtttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttggcagttaatcagccaccagccgtgatacattttaatcctttctcttttgtttccc 380

                                                                       
Query: 181 tcagttccaaatttctgaacttcatcatcagcttttttttgacagactgttccttgactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagttccaaatttctgaacttcatcatcagcttttttttgacagactgttccttgactc 440

                                                                       
Query: 241 tttacctgcatatttctcatcactaatgagtatatttgatagctgctgtgtttccagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttacctgcatatttctcatcactaatgagtatatttgatagctgctgtgtttccagagt 500

                                                                       
Query: 301 tttctatgcactgtattttagagaagtctagcttgtaatctttgtgtaaaaatatgtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctatgcactgtattttagagaagtctagcttgtaatctttgtgtaaaaatatgtaat 560

                                                                       
Query: 361 acacttatgaaaatatactgagcccaggcgtattttagagaatacatactgtatctacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacttatgaaaatatactgagcccaggcgtattttagagaatacatactgtatctacaa 620

                                                                       
Query: 421 gttagcattccattttttcaagctctgaaatgtttactgagaattttgcctgttgcttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gttagcattccattttttcaagctctgaaatgtttactgagaatttttcctgttgcttag 680

                                                                       
Query: 481 aacacagtactgctcccctttgcttttgcaggcagccgaagtgatttttcattgcaagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacacagtactgctcccctttgcttttgcaggcagccgaagtgatttttcattgcaagaa 740

                                                                       
Query: 541 taaaagcgtgttttgaattataataagcatttcaagaaaaaaaaggtgtcagatactcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaagcgtgttttgaattataataagcatttcaagaaaaaaaaggtgtcagatactcag 800

                                                                       
Query: 601 atactgtaattctcaagaataaaagaaattaatctacttctgtccagaattaataatctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atactgtaattctcaagaataaaagaaattaatctacttctgtccagaattaataatctt 860

               
Query: 661 atgc 664
           ||||
Sbjct: 861 atgc 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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