BAC Information

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BAC

Clone NameMSMg01-275D17
Chromosome10 (Build37)
Map Location 14,089,720 - 14,090,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275D17.T7 (MSMg01no275_d17.b1)MSMg01-275D17.TJ (MSMg01no275_d17.g1)
ACCAG413743AG413744
length734734
length of high quality
(start - end)
169 (50 - 218)654 (81 - 734)
definitionCHROMAT_FILE: MSMg01no275_d17.b1 PHD_FILE: MSMg01no275_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:56 2005CHROMAT_FILE: MSMg01no275_d17.g1 PHD_FILE: MSMg01no275_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACCAGTCACTCTTTTTTTTTTTATACAAGCACTTTTCTTT
TTTATTTAAAAATTTTTATACAATATCTTTTGATCAGGGTTGCCCTTCCC
CAGATCCTCCTGACCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTGTCTGTCTCTGTGTCTCTCTGTCTCAAAAAAGA
AGCACAAAAGAAGAGGTAGAGAGATTTTAAGAGCCAGAGGTAGTGGATGG
TTCCATAAACAAAAGGCGGGATACATATTTGACCTCACATAAGCTATGAC
GATCTATAAAGACTTGACAGATTCAAGCTAGACAAAATCCCAGCACTGAC
AAAAGGAAGTAGACACAAAGTCTCATCGCAAACCAAGCAGCAATTTTCAG
TTGCTACCTGCTAGGAAAGGAAAAGTCCGCTTTCTCCAAGGGAATGTCAT
TGTGTATGCCAGCCACACATCAGGGCAGGCCAACACAAATGAATGCCATG
GGGTTTTGCTTGCTTGCTTGCTTGCTTGATCTTTAGTGGGCTCTATGCTT
TGTTTTGACTTTTTTTTATTAGGTATTTTCCTCATTTACATTTTCGATGC
TATCCCAAAGGTCCCCCATACCCACCCCCGCAATCCCCTACCCACCCACT
GCCCTTTTTTGGACCTGGCGTTCCCCTGTACTGG
NCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTACCTCTGAGCCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCT
ATATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGCCTTTTGTCTTATTGACGGTGTCTTTTGC
CTTGCAGAAGCTTTGCGATTTTATGAGGTCCCATTTGCCGATTCTCGATC
TTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCATAACGACAC
AGATTCCATTCATGCAGACACAGCTTTCAGCTCTGATCATCTCCAGGTCT
CACCTCTTGAGACGATTACAAGATTAAGTCTTAACATAAGAATTGCCCGG
GAGGTGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGG
TGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTTCCAGGACAGCC
AGGGGTATACAGAGAAACCCTGTCTCAGAAAAAAAAAAAAAAAGAAACCT
AAATAAATAAATAAATAAATAAATAGAATGTTGGGGGAGTCATCAACATC
AGACCATAGTGTCCTTCAAAACCACAGGCTGAGGTAGTCTTAAAAATTAT
CTTACTAATTCCTATGACTCGAGAATCACTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_d17.g1 MSMg01no275_d17.g1 CHROMAT_FILE:
MSMg01no275_d17.g1 PHD_FILE: MSMg01no275_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:56 2005
         (654 letters)



>mm_chr10_14088975_14090028
          Length = 1054

 Score =  455 bits (235), Expect = e-132
 Identities = 276/313 (88%), Gaps = 37/313 (11%)
 Strand = Plus / Minus

                                                                        
Query: 374  gtggtggcacacgcctttaatcccagcactcaggaggcagaggcaggtggatttttgagt 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 gtggtggcacacgcctttaatcccagcactcaggaggcagaggcaggtggatttttgagt 995

                                                                        
Query: 434  tcgaggccagcctggtctacagagttccaggacagccaggggtatacagagaaaccctgt 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  tcgaggccagcctggtctacagagttccaggacagccaggggtatacagagaaaccctgt 935

                                                                        
Query: 494  ctcagaaaaaaaaaaaaaaa---------------------------------gaaacct 520
            ||||||||||||||||||||                                 |||||||
Sbjct: 934  ctcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaacct 875

                                                                        
Query: 521  aaataaataaataaataaataaatagaatgttgggggagtcatcaacatcagaccatagt 580
            |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 874  aaataaataaataaataaata----gaatgttgggggagtcatcaacatcagaccatagt 819

                                                                        
Query: 581  gtccttcaaaaccacaggctgaggtagtcttaaaaattatcttactaattcctatgactc 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  gtccttcaaaaccacaggctgaggtagtcttaaaaattatcttactaattcctatgactc 759

                         
Query: 641  gagaatcactctc 653
            |||||||||||||
Sbjct: 758  gagaatcactctc 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)