BAC Information

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BAC

Clone NameMSMg01-275H18
Chromosome10 (Build37)
Map Location 88,377,241 - 88,377,470
singlet/doubletsinglet
Overlap geneSlc5a8
Upstream geneIgf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Downstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H18.T7 (MSMg01no275_h18.b1)MSMg01-275H18.TJ (MSMg01no275_h18.g1)
ACCAG413925
length737738
length of high quality
(start - end)
---231 (128 - 358)
definitionCHROMAT_FILE: MSMg01no275_h18.b1 PHD_FILE: MSMg01no275_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:14 2005CHROMAT_FILE: MSMg01no275_h18.g1 PHD_FILE: MSMg01no275_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCCCTGTATGTGGAGAAGT
TGGTATTTAGCTGCCTAAGTTGCCCAGTGGATGGGCATGTCTGCTTCAAG
GCTTACTGAAGTTGATCCAGCTTGAGAGCACCCTTCAGCATAATTTCCCA
TGGGGCTTGTCTGTCCTTATAGCAGATGGATAGAATGTGCATCACTTTAT
AGACAGGGACTATTCAGCGGCCTGGAGAGTGGACTCTGTTGTAAGAACTC
TAGCTGCAAGACATTCCCATGGTATCAGGTACCATTCTCCTTTTGGAGTC
TGCCTCCTTCCTTTTCTGCCCGNCCGNACCCCATTAACAATTTTAGTATG
GTTTTCCTGGTTNCNCCTGCCACAACAAAAACTGAATGTGCTTAAGGGAA
GCAGAAACAGACTTTATAGGAGACCCACCATGACATGTTTGCCATATTGC
ACAAACCATTTGGTTGGAGGGAATTCCAGACTACTGCTTCCCCAGTTTCT
CATAAAAGTGTATGTCAATGGGCCTATCACCAGTCACAAGAGCTGGGACA
AGCTTATGGGCCCCTAACCCTTCCTGCTATATTACTGGTCACCGATTGGG
TCTGGAGGAGAGGCAGTCATTGTCTCCATTGTGTACCCATCACCCTCATC
ACATTATTCCAAACCCATGGCCCTACAAGTGACTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h18.g1 MSMg01no275_h18.g1 CHROMAT_FILE:
MSMg01no275_h18.g1 PHD_FILE: MSMg01no275_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:14 2005
         (231 letters)



>mm_chr10_88377041_88377671
          Length = 631

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatgggcatgtctgcttcaaggcttactgaagttgatccagcttgagagcacccttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggatgggcatgtctgcttcaaggcttactgaagttgatccagcttgagagcacccttca 371

                                                                       
Query: 61  gcataatttcccatggggcttgtctgtccttatagcagatggatagaatgtgcatcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gcataatttcccatggggcttgtctgtccttatagcagatggatagaatgtgcatcactt 311

                                                                       
Query: 121 tatagacagggactattcagcggcctggagagtggactctgttgtaagaactctagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tatagacagggactattcagcggcctggagagtggactctgttgtaagaactctagctgc 251

                                                             
Query: 181 aagacattcccatggtatcaggtaccattctccttttggagtctgcctcc 230
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 aagacattcccatggcatcaggtaccattctccttttggagtctgcctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)