BAC Information

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BAC

Clone NameMSMg01-275L21
Chromosome10 (Build37)
Map Location 122,759,997 - 122,901,973
singlet/doubletdoublet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275L21.T7 (MSMg01no275_l21.b1)MSMg01-275L21.TJ (MSMg01no275_l21.g1)
ACCAG414108AG414109
length743745
length of high quality
(start - end)		363 (379 - 741)669 (75 - 743)
definitionCHROMAT_FILE: MSMg01no275_l21.b1 PHD_FILE: MSMg01no275_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:32 2005CHROMAT_FILE: MSMg01no275_l21.g1 PHD_FILE: MSMg01no275_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,901,611 - 122,901,973)(122,759,997 - 122,760,665)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAAAATGGCGAAAGCTAGGATGATGATACATGATAACTAACTCTA
CCAAGCCTGCAGACATGTTAACCGCATGTTATAATCCATTCCAACCATCT
CCCTAGAAGGATAAGCTTATCTTCCAAACTTTGGCAGCCTTCTCTATGCT
GAAGATTCACTTCCAATTAATGGCCAAGAGCTAACCTGCTCTATTAGGAC
ATTGTGTCAATAAACCTGAGGTTTTTTTACTCAGCTGCATGAACAATAAC
TAATTGCAAATATTGAGCTTCCTTGATCTTTTATACAAGAGCTTTCATGG
AAGGCTGACAATTTCCCTAGCTATACCAGGAATTTGTTAAGAGAGAGAAT
AGTTTTATTCATTTCCGTTTTAAACTCTAACTTGATGAAATGACAAATTC
AATGAAAGCATTCCTCCTCCTTCAAAAGTGACTTTACGATACAGATAATT
TATCCCTTATCACTAGCACAGAGATCACAATCATCTGACTTTGCTGTAAA
CAGAGTACTAGGTATACACACATGAGAATCCTGAGATGATTGCTCAAATG
CTAGTATCTACACATGCTAGATGCAGTAACTGAAGACAAAAGGTTTAACT
GTCTTGCATAACTAAATGAGCTAAGGTGAAGTTACAAGAGTATGGCTCTC
TAAATATCAAGATCAGGCCATTCATTCATGTAATCACTATTGG

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGTAGATGGCTAACTTCAC
GTAGGGCAGGAGGAAGTCTTTGCCTGTCTACCACAGTGTTCATTAATGGA
GAAAGCTATAGCTTCTGTCGCAGGCACTGGCTCACAAAACCACTTACAAT
CTGCAGACATTAGTCTGTGCAGGCGAGGATAAAAATTTAATCCTACAGCT
AAATAATAGGAAACTGTTAAAATATTTACAGTAAAATCTGCCAAGTAGCC
AGGACAAATCTCTTCATAAAACACATTTGCCCAAGATCACATCGTGTTCC
CAGGAAATAAAATATATACCACCACAGTGGCATTGTCTTTCTAAAGTCTA
TATTAAAAGGGACAAGCAAACCAATAGATGACATTGTACTTTCTCTTTGT
CTTTCCTCCCACACCTTTAAAGAAAGAGAAACCAGTATTTATTGAATGCC
CACAATCTCCTGAAATAATGATTGAATTGGGAGTTGGGAGACTATTTTCA
TTCTGGCACAGTCATCATGTGACCTTGGGCAAGTCACCACTAAAGTCCAA
ACCTCACTTCCCTTATCACTGTAGTGAGGACATTGGGTTCGATTCTTTCC
ATCTCTACTGTGCTGTGGCCTCAGAAAACAAGGAAGCCTTTCTCTGAAAG
GTGGACCCCTTGGGCTTTTGTCCCCTCTGTGAGTCAAGCAACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_l21.b1 MSMg01no275_l21.b1 CHROMAT_FILE:
MSMg01no275_l21.b1 PHD_FILE: MSMg01no275_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:32 2005
         (363 letters)



>mm_chr10_122901411_122902173
          Length = 763

 Score =  656 bits (339), Expect = 0.0
 Identities = 357/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaatttgttaagagagagaatagttttattcatttccgttttaaactctaacttgatga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaatttgataagagagagaatagttttattcatttccgttttaaactctaacttgatga 504

                                                                       
Query: 61  aatgacaaattcaatgaaagcattcctcctccttcaaaagtgactttacgatacagataa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 aatgacaaattcaatgaaagcattcctcctccttcaaaagtgacttcacgatacagataa 444

                                                                       
Query: 121 tttatcccttatcactagcacagagatcacaatcatctgactttgctgtaaacagagtac 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 443 tttatcccttatcactagcacagagatcacaatcatctgacttttctgtaaacagagtac 384

                                                                       
Query: 181 taggtatacacacatgagaatcctgagatgattgctcaaatgctagtatctacacatgct 240
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 tcggtatacacacatgagaatcctgagatgattgctcaaatgttagtatctacacatgct 324

                                                                       
Query: 241 agatgcagtaactgaagacaaaaggtttaactgtcttgcataactaaatgagctaaggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agatgcagtaactgaagacaaaaggtttaactgtcttgcataactaaatgagctaaggtg 264

                                                                       
Query: 301 aagttacaagagtatggctctctaaatatcaagatcaggccattcattcatgtaatcact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 aagttacaagagtatggctctctaaatatcaagatcaggccattcattcatgcaatcact 204

              
Query: 361 att 363
           |||
Sbjct: 203 att 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_l21.g1 MSMg01no275_l21.g1 CHROMAT_FILE:
MSMg01no275_l21.g1 PHD_FILE: MSMg01no275_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:32 2005
         (669 letters)



>mm_chr10_122759797_122760865
          Length = 1069

 Score = 1224 bits (633), Expect = 0.0
 Identities = 660/669 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagagagtagatggctaacttcacgtagggcaggaggaagtctttgcctgtctaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 ttcagagagtagatggctaacttcacgtagggcaggaggaagtctttgaatgtctaccac 260

                                                                       
Query: 61  agtgttcattaatggagaaagctatagcttctgtcgcaggcactggctcacaaaaccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgttcattaatggagaaagctatagcttctgtcgcaggcactggctcacaaaaccact 320

                                                                       
Query: 121 tacaatctgcagacattagtctgtgcaggcgaggataaaaatttaatcctacagctaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaatctgcagacattagtctgtgcaggcgaggataaaaatttaatcctacagctaaat 380

                                                                       
Query: 181 aataggaaactgttaaaatatttacagtaaaatctgccaagtagccaggacaaatctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataggaaactgttaaaatatttacagtaaaatctgccaagtagccaggacaaatctctt 440

                                                                       
Query: 241 cataaaacacatttgcccaagatcacatcgtgttcccaggaaataaaatatataccacca 300
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 441 cataaaacacatttgcccaagatcacatcgtgctcccaggaaataaaatatagaccacca 500

                                                                       
Query: 301 cagtggcattgtctttctaaagtctatattaaaagggacaagcaaaccaatagatgacat 360
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cggtggcgttgtctttctaaagtctatattaaaagggacaagcaaaccaatagatgacat 560

                                                                       
Query: 361 tgtactttctctttgtctttcctcccacacctttaaagaaagagaaaccagtatttattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtactttctctttgtctttcctcccacacctttaaagaaagagaaaccagtatttattg 620

                                                                       
Query: 421 aatgcccacaatctcctgaaataatgattgaattgggagttgggagactattttcattct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgcccacaatctcctgaaataatgattgaattgggagttgggagactattttcattct 680

                                                                       
Query: 481 ggcacagtcatcatgtgaccttgggcaagtcaccactaaagtccaaacctcacttccctt 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 ggcacagtcatcatgtgaccttgggcaagtcactactaaagtccaaacctcacttccctt 740

                                                                       
Query: 541 atcactgtagtgaggacattgggttcgattctttccatctctactgtgctgtggcctcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcactgtagtgaggacattgggttcgattctttccatctctactgtgctgtggcctcag 800

                                                                       
Query: 601 aaaacaaggaagcctttctctgaaaggtggaccccttgggcttttgtcccctctgtgagt 660
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 801 aaaacaaggaagcctttctctaaaaggtggacccctggggcttttgtcccctctgtgagt 860

                    
Query: 661 caagcaaca 669
           |||||||||
Sbjct: 861 caagcaaca 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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