BAC Information

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BAC

Clone NameMSMg01-275N22
Chromosome10 (Build37)
Map Location 51,900,769 - 51,901,062
singlet/doubletsinglet
Overlap geneRos1
Upstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2
Downstream geneDcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275N22.T7 (MSMg01no275_n22.b1)MSMg01-275N22.TJ (MSMg01no275_n22.g1)
ACCAG414205AG414206
length746743
length of high quality
(start - end)
294 (432 - 725)295 (434 - 728)
definitionCHROMAT_FILE: MSMg01no275_n22.b1 PHD_FILE: MSMg01no275_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:41 2005CHROMAT_FILE: MSMg01no275_n22.g1 PHD_FILE: MSMg01no275_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGACGAATACCGAATGGCTGAGAAGCACCTGAAAAAAA
TGTTCAACATCCTTAATCATCACCCAAATGCAAATCAAAACAACCTTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAATTGCTGGCGAGGATGTGGAGAAAGTGGAACACTCCTCCGTTGCTGG
TGGGACTGCAAACTTGTACAACCACAAGTCAGTCTGGAGGTTCCTCAGAA
AATTGGACATAATACTACCAGAAGATCCAGTAATACCTCTCCTGGGCATA
TACTCATATTATGTTCTAACTACCCCCCCCAACACATGTTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAAAAGCTGGAAAGAACCCAGATGTC
CCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAA
TACTACTCAGCTATTAAAAGCAATGAATTTATGAAATTCTTGGACAATGG
ATGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAA
GTCATTAGATATGCACTCACTGATAAATGGTTATTAGCCCAGAAACTTAG
AGTACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAAGAAAG
ACCAACATGTGGATACTTCATTCCTCTTTAGAATAGGGAACAAANT
ACGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAAATGAAGCGTGTTAAA
GTAGAAACAAAGCAAAGGTCTACCCCAGATTCATGATTTTTGCCTACACA
GCTGGATGACTTGGGAAAAATGACTTAATGTTTTATCATTGGATGATAAG
AGGTTGGGCTATACAGTTCTTGTTGTATCTTTCAGCTTTTTTATGTTTTG
TGGCTTTATTACTTTTCTGCATGTAGATTCACTTACCCAACAAATGTTTA
TTGACTCAACGTATGTATGTGTCAGGCACTGGGCTAAGCCTGAGTTTGAT
GAAATCTTTAATTTTCTCCNANACGNATCCCACCATGAACAGAAAACATA
GCAGTGTTATTATCATGGAACAAATAAAAGATCACCTCACTTGCCTGTGA
GACCTTCGGACTAAAATAGGAAGAGCTTTCCAGTACAAAGATTTTTATAC
TTTTCTCCACTTGAGATCCTAACTCTGAGGAGATTTCATACGATCTTGCT
GTATATGGGAGAAATGATGTAAATCTTAATTGGAGATGGCTCAGTGGGAA
TAGGTGCTGGCCACTAACTTGACCAGCTGAGTTCAATTCCCTAGAGCCAC
ATGGCTGGAAAGGAAGAACCTGTAGGTGAGCACTGGGAACTGAACCTAAA
TCATGTGCAAGAGCAGTAAATACTCTCAACCATTTGAACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_n22.g1 MSMg01no275_n22.g1 CHROMAT_FILE:
MSMg01no275_n22.g1 PHD_FILE: MSMg01no275_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:41 2005
         (295 letters)



>mm_chr10_51900714_51901408
          Length = 695

 Score =  524 bits (271), Expect = e-153
 Identities = 289/295 (97%), Gaps = 1/295 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcacttgcctgtgagaccttcggactaaaataggaagagctttccagtacaaagatt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 349 acctcacttgcctgtgagaccttcggactgaaataggaagagctttccagtacaaagatt 290

                                                                       
Query: 61  tttatacttttctccacttgagatcctaactctgaggagatttcatacgatcttgctgta 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttatacttttctccgcttgagatcctaactctgaggagatttcatacgatcttgctgta 230

                                                                       
Query: 121 tatgggagaaatgatgtaaatcttaattggagatggctcagtgggaataggtgctggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tatgggagaaatgatgtaaatcttaattggagatggctcagtgggaataggtgctggcca 170

                                                                       
Query: 181 ctaacttgaccagctgagttcaattccctagagccacatggctggaaaggaagaacctgt 240
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 169 ctgacttgaccagctgagttcaattccctagagccacatggctggaaaagaagaacctgt 110

                                                                  
Query: 241 aggtgagcactgggaactgaacctaaatcatgtgcaagagcagtaaatactctca 295
           ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 109 aggtgagcactgggaactgaacc-aaatcatgtgcaagagcagcaaatactctca 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)