BAC Information

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BAC

Clone NameMSMg01-276A05
Chromosome10 (Build37)
Map Location 104,502,197 - 104,606,485
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
Downstream geneTmtc2, EG627573, BC067068, Ccdc59, EG667758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276A05.T7 (MSMg01no276_a05.b1)MSMg01-276A05.TJ (MSMg01no276_a05.g1)
ACCAG414311AG414312
length726736
length of high quality
(start - end)		306 (45 - 350)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no276_a05.b1 PHD_FILE: MSMg01no276_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:52 2005CHROMAT_FILE: MSMg01no276_a05.g1 PHD_FILE: MSMg01no276_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,502,197 - 104,502,497)(104,606,205 - 104,606,485)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAATGTACATAAATCTTGAGAATCCCAGATCATTAGTCCCAACC
GCTGCTTCCATAAAACGGACCTAAAGCCAAAATCAAATGCTCATTCCCTT
ATGGATTTTACACAGCCTGTTCCTCACAGGTAGCTAGGCACAGCTCTTGT
GGCTTCCTGGTACAGCAGACAGCAGCCTTTAGTAACTATTTTCAAGTAAG
AGCAGAAAGGTGACAGACTACTACAGTTAAAATGATTTCTTACAAAGTGT
TTAAATTTATGCAAGTAATGCAGCTAGCATTCACTGATATCTCTCTTGNC
ATTTTCTTCTTTTTTCCTCCCCCCCCCCAGAAGAANGAAGTACCAACTTT
TCATATGCTTGTACATCTTCATATCACTAATCCTTTGTTCCTCATCCTAG
CAGCTCCATGGGCTCATGTCCAAAATTGACAACCTCTCCATGAACATTCA
TTCACTAACCCAAGAATCTTTTACAAAAAAACATTATCTCCTTTCAAAAA
CTCCTTTGGTTCTGGGAACAAAAAAAAAACCCTTCCCTCCTAAAAAATAA
AACCCCATCAACCATTTCCCTTGGTTTTCAAAAAGCTTTCCCCCCTCCCT
TTTCCAAATACAAACCCTTTCCTTCTTGAAAAACAATTTTTAACTCCCAT
TCCACAGGTCCACCCAAAAAATATTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGATTTAGGTGCAGGTGTAAG
TAGTTGAATCAATAGAAGGCAGTAGTTGCAATGGCTGTTGAACCCACACT
TTCCTCCTTCTGTGAGACTCAGAGAACTTTTCCCTTTGGAAGCTAGCTGA
GAACCTATTTCAGCAAAACTTGGCTGGTATTGCTCTCCACGGTGAGAGCT
GCAGTCGTCAAGACGGAGACACAGGCCCTGAGCTGACAGTGCACAGGGAA
AGGAATACATTTGTACTTTAACATCTGTGTCTCCTCAGAGTGCCAAGGTG
GTAAGCACCATTTTTTTTTAACCTCCACCCCCCCCACAGGGACGACTGTG
AAGGATATCTTCCCTGCAAGAAGGGGTGGGTTATTGATTAAAATATAAAG
ATGCCATGTGCACAAACATTATCATTATTGCAGAGCCCGCATACTGATAT
GCGTACACATATGTATATCTGTATATGTATATATATACACATGTGTGTGT
TTACATTGTACTATTCATCACCATGACAGTAATTTGTAAATGTGAAGGAA
GTACTACAGCAGAGGAACATAAAAGATTAGCAAGTGGCAGACAGAAAGGG
CAACCGCGGATTCCTACCAACTTTGAATTACAGTACCAGGACTGGCTAGA
AGAAGGCTGTCTTTTTTTTTCATAAATTTGCTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_a05.b1 MSMg01no276_a05.b1 CHROMAT_FILE:
MSMg01no276_a05.b1 PHD_FILE: MSMg01no276_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
         (306 letters)



>mm_chr10_104501994_104502699
          Length = 706

 Score =  520 bits (269), Expect = e-152
 Identities = 293/301 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaaatgtacataaatcttgagaatcccagatcattagtcccaaccgctgctt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaaatttacataaatcttgagaatcccagatcattagtcccaaccgctgctt 263

                                                                       
Query: 64  ccataaaacggacctaaagccaaaatcaaatgctcattcccttatggattttacacagcc 123
           ||||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 ccataaaacggaaattaagccaaaagcaaatgctcattcccttatggattttacacagcc 323

                                                                       
Query: 124 tgttcctcacaggtagctaggcacagctcttgtggcttcctggtacagcagacagcagcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttcctcacaggtagctaggcacagctcttgtggcttcctggtacagcagacagcagcc 383

                                                                       
Query: 184 tttagtaactattttcaagtaagagcagaaaggtgacagactactacagttaaaatgatt 243
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 384 tttagtaactattttcaagtaagaacagaaaggtgacagactactacggttaaaatgatt 443

                                                                       
Query: 244 tcttacaaagtgtttaaatttatgcaagtaatgcagctagcattcactgatatctctctt 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tcttacaaagtgtttaaatttatgcaagtaaggcagctagcattcactgatatctctctt 503

            
Query: 304 g 304
           |
Sbjct: 504 g 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no276_a05.g1 MSMg01no276_a05.g1 CHROMAT_FILE:
MSMg01no276_a05.g1 PHD_FILE: MSMg01no276_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
         (287 letters)



>mm_chr10_104606001_104606687
          Length = 687

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gatttaggtgcaggtgtaagtagttgaatcaatagaaggcagtagttgcaatggctgttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatttaggtgcaggtgtaagtagttgaatcaatagaaggcagtagttgcaatggctgttg 426

                                                                       
Query: 65  aacccacactttcctccttctgtgagactcagagaacttttccctttggaagctagctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aacccacactttcctccttctgtgagactcagagaacttttccctttggaagctagctga 366

                                                                       
Query: 125 gaacctatttcagcaaaacttggctggtattgctctccacggtgagagctgcagtcgtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaacctatttcagcaaaacttggctggtattgctctccacggtgagagctgcagtcgtca 306

                                                                       
Query: 185 agacggagacacaggccctgagctgacagtgcacagggaaaggaatacatttgtacttta 244
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 305 agatggagacacaggccctgagctgacagtgcacagggaaaggaatacatctgtacttta 246

                                                    
Query: 245 acatctgtgtctcctcagagtgccaaggtggtaagcaccat 285
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acatctgtgtctcctcagagtgccaaggtggtaagcaccat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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