MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-276C09
Chromosome	10 (Build37)
Map Location	115,100,231 - 115,100,516
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Trhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
Downstream gene	EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080
Link	Open Mouse BAC browser

Click to get alignment info.

name	Trhde (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237553 MGI:2384311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930473D10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78012 MGI:1925262
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tph2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216343 MGI:2651811
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbc1d15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66687 MGI:1913937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668041 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668041
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 91 ESTs, 7 Proteins pseudo : _no_value

name	Rab21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216344 MGI:894308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67226 MGI:1914476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66816 MGI:1914066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc131 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216345 MGI:2446143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lgr5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14160 MGI:1341817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A930009A15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77798 MGI:1925048
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs

name	LOC668071 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668071
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 192 ESTs, 9 Proteins pseudo : _no_value

name	EG668073 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668073 MGI:3642931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Tspan8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216350 MGI:2384918
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptprr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19279 MGI:109559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933416C03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619332 MGI:3588269
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	Ptprb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19263 MGI:97809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnmb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58802 MGI:1913272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cnot2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72068 MGI:1919318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	LOC668080 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 588 ESTs, 5 Proteins pseudo : _no_value

name	Trhde (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122816 GeneID:237553 MGI:2384311
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TRH-degrading enzyme transcript_id : NM_146241.1

name	4930473D10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261182 GeneID:78012 MGI:1925262
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 4930473D10 gene transcript_id : XM_001480639.1

name	Tph2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27734181 GeneID:216343 MGI:2651811
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tryptophan hydroxylase 2 transcript_id : NM_173391.1

name	Tbc1d15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981206 GeneID:66687 MGI:1913937
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 15 transcript_id : NM_025706.2

name	Rab21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33859750 GeneID:216344 MGI:894308
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB21, member RAS oncogene family transcript_id : NM_024454.1

name	Tmem19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366688 GeneID:67226 MGI:1914476
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 19 transcript_id : NM_133683.2

name	Thap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955182 GeneID:66816 MGI:1914066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : THAP domain containing, apoptosis associated protein 2 transcript_id : NM_025780.3

name	Ccdc131 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90991705 GeneID:216345 MGI:2446143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 131 transcript_id : NM_001033261.2

name	Lgr5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624771 GeneID:14160 MGI:1341817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing G protein coupled receptor 5 transcript_id : NM_010195.2

name	A930009A15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388660 GeneID:77798 MGI:1925048
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs product : RIKEN cDNA A930009A15 gene transcript_id : XM_902233.2

name	EG668073 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261186 GeneID:668073 MGI:3642931
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : predicted gene, EG668073 transcript_id : XM_994118.2

name	Tspan8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122474 GeneID:216350 MGI:2384918
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetraspanin 8 transcript_id : NM_146010.1

name	Ptprr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755247 GeneID:19279 MGI:109559
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, R transcript_id : NM_011217.1

name	Ptprb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23618913 GeneID:19263 MGI:97809
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, B transcript_id : NM_029928.1

name	Kcnmb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946833 GeneID:58802 MGI:1913272
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium large conductance calcium-activated channel, subfamily M, beta member 4 transcript_id : NM_021452.1

name	Cnot2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801769 GeneID:72068 MGI:1919318
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 2 transcript_id : NM_001037846.2

name	Cnot2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312479 GeneID:72068 MGI:1919318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 2 transcript_id : NM_028082.1

name	Cnot2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83745113 GeneID:72068 MGI:1919318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 2 transcript_id : NM_001037847.1

name	Cnot2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922714 GeneID:72068 MGI:1919318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCR4-NOT transcription complex, subunit 2 transcript_id : NM_001037848.2

name	Trhde (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122817 CCDS:CCDS24175.1 GeneID:237553 MGI:2384311
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0016921 - pyroglutamyl-peptidase II activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : thyrotropin-releasing hormone degrading ectoenzyme protein_id : NP_666353.1

name	4930473D10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261183 GeneID:78012 MGI:1925262
definition	codon_start : 1 product : hypothetical protein LOC78012 protein_id : XP_001480689.1

name	Tph2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734182 GeneID:216343 MGI:2651811
definition	GO_function : GO:0016597 - amino acid binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004510 - tryptophan 5-monooxygenase activity [Evidence IDA] GO_process : GO:0009072 - aromatic amino acid family metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0042427 - serotonin biosynthesis [Evidence IEA]; GO:0006587 - serotonin biosynthesis from tryptophan [Evidence IC] codon_start : 1 exception : mismatches in translation note : neuronal tryptophan hydroxylase product : tryptophan hydroxylase 2 protein_id : NP_775567.1

name	Tbc1d15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981207 CCDS:CCDS24176.1 GeneID:66687 MGI:1913937
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : TBC1 domain family, member 15 protein_id : NP_079982.2

name	Rab21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859751 CCDS:CCDS24177.1 GeneID:216344 MGI:894308
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB21, member RAS oncogene family protein_id : NP_077774.1

name	Tmem19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526846 CCDS:CCDS24178.1 GeneID:67226 MGI:1914476
definition	codon_start : 1 product : transmembrane protein 19 protein_id : NP_598444.1

name	Thap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385250 CCDS:CCDS24179.1 GeneID:66816 MGI:1914066
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : THAP domain containing, apoptosis associated protein 2 protein_id : NP_080056.1

name	Ccdc131 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:90991706 GeneID:216345 MGI:2446143
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : proline/serine-rich coiled-coil 2 protein_id : NP_001028433.2

name	Lgr5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110624772 CCDS:CCDS24180.1 GeneID:14160 MGI:1341817
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0016500 - protein-hormone receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : follicle expressed hormone; G protein-coupled receptor 49 product : leucine rich repeat containing G protein coupled receptor 5 protein_id : NP_034325.2

name	A930009A15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027689 GeneID:77798 MGI:1925048
definition	codon_start : 1 product : hypothetical protein LOC77798 protein_id : XP_907326.1

name	EG668073 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388672 GeneID:668073 MGI:3642931
definition	codon_start : 1 product : hypothetical protein protein_id : XP_999212.1

name	Tspan8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122475 CCDS:CCDS24181.1 GeneID:216350 MGI:2384918
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 note : transmembrane 4 superfamily member 3 product : tetraspanin 8 protein_id : NP_666122.1

name	Ptprr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755248 CCDS:CCDS24182.1 GeneID:19279 MGI:109559
definition	EC_number : 3.1.3.48 GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0019901 - protein kinase binding [Evidence IDA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005001 - transmembrane receptor protein tyrosine phosphatase activity [Evidence ISS] GO_process : GO:0001701 - embryonic development (sensu Mammalia) [Evidence ISS]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] [Evidence ISS]; GO:0007185 - transmembrane receptor protein tyrosine phosphatase signaling pathway [Evidence IEA] codon_start : 1 note : STEP-like PTPase; protein-tyrosine-phosphatase-SL product : protein tyrosine phosphatase, receptor type, R protein_id : NP_035347.1

name	Ptprb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23618914 GeneID:19263 MGI:97809
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0007185 - transmembrane receptor protein tyrosine phosphatase signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation note : vascular endothelial protein tyrosine phosphatase product : protein tyrosine phosphatase, receptor type, B protein_id : NP_084204.1

name	Kcnmb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946834 CCDS:CCDS24184.1 GeneID:58802 MGI:1913272
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence ISS] GO_function : GO:0015269 - calcium-activated potassium channel activity [Evidence IEA] [Evidence ISS]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0005513 - detection of calcium ion [Evidence ISS]; GO:0019228 - generation of action potential [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA] [Evidence ISS]; GO:0001508 - regulation of action potential [Evidence ISS]; GO:0046928 - regulation of neurotransmitter secretion [Evidence ISS]; GO:0019229 - regulation of vasoconstriction [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : large conductance calcium-dependent potassium ion channel beta 4 subunit; Slowpoke beta 4 product : calcium activated potassium channel beta 4 subunit protein_id : NP_067427.1

name	Cnot2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83745108 GeneID:72068 MGI:1919318
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : CCR4-NOT transcription complex, subunit 2 isoform a protein_id : NP_001032935.1

name	Cnot2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83745114 GeneID:72068 MGI:1919318
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 2 product : CCR4-NOT transcription complex, subunit 2 isoform a protein_id : NP_001032936.1

name	Cnot2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312480 CCDS:CCDS24185.1 GeneID:72068 MGI:1919318
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 3 product : CCR4-NOT transcription complex, subunit 2 isoform b protein_id : NP_082358.1

name	Cnot2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83745118 GeneID:72068 MGI:1919318
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 4 product : CCR4-NOT transcription complex, subunit 2 isoform c protein_id : NP_001032937.1

name	LOC668041 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261184 GeneID:668041
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 91 ESTs, 7 Proteins product : similar to 40S ribosomal protein S24 pseudo : _no_value transcript_id : XR_034785.1

name	LOC668071 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261185 GeneID:668071
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 192 ESTs, 9 Proteins product : similar to ribosomal protein S3A pseudo : _no_value transcript_id : XR_035703.1

name	4933416C03Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149260888 GeneID:619332 MGI:3588269
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933416C03 gene pseudo : _no_value transcript_id : XR_035083.1

name	LOC668080 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261187 GeneID:668080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 588 ESTs, 5 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_034799.1

clone name	MSMg01-108I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363A04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-493O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416M14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-398J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465M24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-075A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252I10
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-276C09.T7 (MSMg01no276_c09.b1)	MSMg01-276C09.TJ (MSMg01no276_c09.g1)
ACC	AG414412	AG414413
length	727	734
length of high quality (start - end)	338 (381 - 718)	287 (77 - 363)
definition	CHROMAT_FILE: MSMg01no276_c09.b1 PHD_FILE: MSMg01no276_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:01 2005	CHROMAT_FILE: MSMg01no276_c09.g1 PHD_FILE: MSMg01no276_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:01 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTGCACCTGGCCTGACAGAGCCCCACCTTGCTCCTTCATCCTCACAC CTTACTGATGCTCTCTGTTCCTCTACTTCCACAAACACCTCACACTCTTG GCTATCTCAGGGTCTCTGCTTTCATAGCTCCTCACTCTGAAATGCTCTGT CTTAACTGTAGGACCAGCCTCTCCCCAGCTCCTGATCAAAGTTTAGATGT CACCTTTCCCATTTGAGATTTATTTATTGTTTTTAAAATTAAATTCAAAT GGTATTATTTCCCTATTCTCTTTCCTCCTTCCAGTGCCTCTCATATATCC CTGCCTCCCTTTTTTTTCCTCCCCTCCGCCTTTGTGTGTCAACTTGACAC AAGCTGGAGTTATCACAGAGAAAGAAACCTCCCTTGAGGAAATGCCTCCA TGAGATGCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGTGGGAGG GCCCATTACAGATGGTGCCATACCTGGACTGGTAGTCTTGGGTTCTATAA GAAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCT GCTCCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGATGATGAACA GCAGTATGGAAGTGTAAGCTGAATAAACCTCCCCAACTTGCATCTTGGTC ATGATGTTTGTGCAGGAATAGAAACCN	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAAAGTCCACAAATAAAATA CTTGCTGTCCGTTTCTTTTATATTGTTGTTATGAGAATGTCATACAGGAG TGCTGTATTTACATTTCTATGTGCTTGGGGCTGAACACTTAATTATTTTT AAAGAGTTAAGGCAAATGCAAGGTACGCAGAAATGTTCCTAAAGATGACC CTACCCATCAACTGTGTATTTGCCAGATTAAAGCTTCGGAGCAAACAACT ACATAGCCCGGTGGCTTTAAATGGCAGGCTTTGTTTTTGTCATTGTTGCG AGTTTGACTTGTTTGTTGACTTCCCCCCCCCCCCTTCCTTTTGTCTGAAA CAGTGGCCCTGGCTTATTCTGACCGTGCTATGGAGACCAGACTGATTTTG ACCTTGTAGTGATCCTTCCAGCCTCTGCTTCCCTGAGCTACAGATCTTGC ACTACCACACCTCCACAGGCATTTTTTTTTTAGTTCAAGGTTCTGCAGCT GATTGGATGTCTCCTCTGTTCTCAGCCAGGCATGCTCATGCTTTGGATTC AGGTGGAGATCTGATCGTGTTGGCTTTGCCGTTCTTGACTGAGTAAAGAA TTGGTTTGTAACTGTGGTGCAGACTCGATACTTCTATTGTTTCTCAGTCT CCAAAAGGCATTTTCAAGGTCATAACAAGGTTGA
quality values	Open. Hide. 8 10 8 8 8 17 21 39 59 47 44 44 39 39 39 37 23 23 24 27 28 28 39 39 31 28 30 30 32 35 35 23 15 11 11 11 19 34 43 32 32 22 29 29 42 41 68 68 47 47 47 47 51 51 68 68 68 68 43 32 41 20 20 31 34 57 47 47 47 47 50 50 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 53 47 47 47 47 47 50 50 50 59 59 59 59 57 57 57 57 53 53 50 50 46 46 47 47 47 29 29 11 11 11 22 24 43 43 33 33 33 33 33 36 53 53 53 53 42 42 53 53 53 50 50 53 53 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 54 54 54 57 59 59 68 68 68 68 68 50 50 59 59 59 59 57 57 57 57 57 57 57 57 59 57 57 53 53 50 43 41 25 18 17 17 13 19 10 10 9 9 10 19 13 11 11 11 12 22 10 8 8 8 8 8 8 12 16 25 30 59 59 59 50 50 53 53 57 57 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 47 39 39 22 27 12 14 9 9 9 9 10 15 18 28 34 41 34 41 48 48 48 48 57 57 57 57 57 57 57 59 59 57 57 57 53 50 50 57 57 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 59 57 59 59 68 68 59 68 59 59 59 57 57 54 57 50 59 59 57 57 57 57 57 68 68 57 59 57 57 57 57 57 57 52 57 57 68 68 68 68 68 68 68 68 59 57 57 57 68 57 57 57 57 59 57 57 57 57 57 57 57 57 50 57 48 50 50 57 59 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 59 59 57 57 57 46 48 57 57 57 57 57 59 59 68 43 43 36 36 36 43 43 57 59 59 48 43 43 43 48 48 48 48 48 48 48 57 43 43 40 40 40 43 44 50 50 50 48 41 40 39 39 37 37 37 36 31 41 41 40 39 46 43 59 43 43 32 32 32 37 37 37 37 37 40 41 41 41 41 41 37 37 44 44 44 37 32 34 39 39 33 41 41 41 37 37 46 48 41 41 47 37 33 32 27 22 20 30 28 34 34 39 37 37 35 31 31 39 37 36 33 37 33 25 24 30 21 24 14 11 11 11 10 10 3 0	Open. Hide. 8 8 8 12 10 8 8 8 8 15 23 44 47 47 57 50 50 59 57 57 57 57 57 57 53 53 53 53 53 47 43 43 42 42 43 43 39 34 42 41 41 36 42 32 37 23 23 44 43 54 68 68 48 57 57 43 42 48 48 68 57 48 41 41 41 46 50 57 57 57 50 50 50 50 50 51 68 68 50 50 41 41 41 50 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 52 52 43 52 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 68 68 68 68 68 57 57 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 44 36 28 23 23 23 23 28 41 59 59 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 50 50 50 34 36 32 32 24 25 11 11 11 9 9 11 16 12 9 9 10 8 9 12 10 10 13 8 11 10 10 10 13 19 33 41 59 59 59 59 59 59 59 59 59 53 53 53 53 53 53 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 57 46 44 36 28 23 27 27 23 23 13 13 13 15 15 32 32 37 37 37 48 48 57 57 57 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 68 68 57 57 57 59 59 59 59 68 68 68 68 68 68 59 59 57 59 57 57 57 57 54 54 54 54 54 59 59 59 59 57 57 57 57 57 57 57 57 54 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 57 46 46 37 43 46 59 59 57 57 57 57 57 57 57 57 54 54 54 57 57 68 57 57 48 48 48 57 48 48 48 48 48 57 46 46 43 43 43 43 43 48 48 48 40 40 40 39 37 39 30 28 28 29 30 37 39 38 30 30 25 25 28 34 34 46 47 48 48 34 59 46 46 43 47 37 41 37 31 32 32 32 26 28 35 34 27 28 28 28 33 33 48 48 37 34 23 22 22 31 24 24 12 19 19 28 28 30 34 28 39 28 30 14 14 12 13 13 22 22 28 37 36 33 31 21 21 29 22 23 22 22 20 16 17 14 11 11 14 15 27 27 33 30 22 22 21 20 20 30 28 31 28 25 20 15 14 13 10 10 9 9 12 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no276_c09.g1 MSMg01no276_c09.g1 CHROMAT_FILE:
MSMg01no276_c09.g1 PHD_FILE: MSMg01no276_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:01 2005
         (287 letters)



>mm_chr10_115100031_115100716
          Length = 686

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccaaagtccacaaataaaatacttgctgtccgtttcttttatattgttgttatgaga 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 486 tctccaaagtccacaaataaaatacttgctgtccatttcttttatattgttgttatgaga 427

                                                                       
Query: 61  atgtcatacaggagtgctgtatttacatttctatgtgcttggggctgaacacttaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgtcatacaggagtgctgtatttacatttctatgtgcttggggctgaacacttaattat 367

                                                                       
Query: 121 ttttaaagagttaaggcaaatgcaaggtacgcagaaatgttcctaaagatgaccctaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttttaaagagttaaggcaaatgcaaggtacgcagaaatgttcctaaagatgaccctaccc 307

                                                                       
Query: 181 atcaactgtgtatttgccagattaaagcttcggagcaaacaactacatagcccggtggct 240
           ||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 306 atcaactgtctatttgccagactaaagcttcggagcaaacaactacatag-ccagtggct 248

                                                          
Query: 241 ttaaatggcaggctttgtttttgtcattgttgcgagtttgacttgtt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttaaatggcaggctttgtttttgtcattgttgcgagtttgacttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information