BAC Information

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BAC

Clone NameMSMg01-276N06
Chromosome10 (Build37)
Map Location 45,863,222 - 45,863,532
singlet/doubletsinglet
Overlap genenone
Upstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
Downstream geneLOC100041632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276N06.T7 (MSMg01no276_n06.b1)MSMg01-276N06.TJ (MSMg01no276_n06.g1)
ACCAG414901AG414902
length743750
length of high quality
(start - end)
315 (45 - 359)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no276_n06.b1 PHD_FILE: MSMg01no276_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:50 2005CHROMAT_FILE: MSMg01no276_n06.g1 PHD_FILE: MSMg01no276_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAACAGCATCCTGGTGTTGGGCTAATAGCCAAATACGCTTTTAG
TATTTGTTTATGTATACCTTTCACTTTTATTTCAGATGTAAAAAAACAGT
AAACAGCTAAGATTCCAGATAGTACTGACAGTGTTTGGAGAATTTTCCTT
TATATGATTTAGTGGTGATATTTATCCAGGATTCATCATTCATTAGTTTC
TTGATAATAATTAAAAACAAAACATGCTTCATGTATGGAAAAATCTGCCA
GGTATCTGAAAAGTCTTTTGGTTTTGCTCTCTGAATTTATCCTCCCTAGA
TTTCATTCAATTCAGTAGNCTTCCTGGCCCGCCCGCAAACAAGTGGGCTA
GAGAACACTATGACAAGAGGAAAGAATAAAAAGAAACACAAACACTAGAA
GGCTAAAGGCAGTTGTGTTTTAGAGTCGTTAAGGAATTTTCCCTGTTTTC
ATGATCCTGGATATTGTATTATTTTAAAGTGATATATTCCTTTAGTAATG
AGAAAATGAGAAAAGTAAATGCATCTAATAGTCTCTAGTAATGTTTCAAT
CAGGACTCCTGAGTGTTACTCTCCTGGAATATTTTTCTTATATATAAGAT
CTGCTCCTTGGAAACGTCCGGTTTCTTGAAGATGGCAGCATAAATTTGCC
TTTGNAAACAAAATGCGACTCACTGAACTGATTCTTCCCTCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGGAGCCTGAAGCAGCATGCACG
GGTAACTTGAGTATGTATTATGGCTCGCAGCTTAGTGTTGTTGTGGGACT
CTTGAGTATGTGAATAAGTGGGTCTCTGATTCCTGTGCCCTCTCTTGACT
TGTTCTTCTGCTTGTTTTGTACAATGATGATGTGTTAGATTTTGTTTTAT
CATATTACATTATATTAAATTTTTATATTATTATGCCCTATTATTCCTTA
GAAGTCTGATTGTTTTCTAATGATATAAAGGGAGTGAGTCCAGGTGGGAA
GGGACTGGGAGCTTTTTTTGTTCACACTACTCCCCCATATATCATATTAT
GTAAGAAAAAAATCTATGTTACATGAAAGGGAAATAAAGGGATTACAAAC
ACAGAGGGGAAAGAAAGACTATGTTGTGTTCAAATATCCCTATCAGCATA
CATTAATATGGTGACAAAGCAAAGGTAAAAACGTAAAAGGTAAAAAGTTA
AAAAGGTAAAAACGTCTACTAAACAGTAGGTTTGATCGTGAAAAAGTGTA
CTAATATATTGCTTAAGAATTTAATTAAAGTGAGTCACATTCATGGAAAA
AAATCAAAGAATATGGAAATTTATAGAAGTAATAAGATCAATAATATATT
TCTACCACTTCATAAATCGCTATTAATATTTCTAAATGTATAAATTTCTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_n06.b1 MSMg01no276_n06.b1 CHROMAT_FILE:
MSMg01no276_n06.b1 PHD_FILE: MSMg01no276_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:50 2005
         (315 letters)



>mm_chr10_45863018_45863732
          Length = 715

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaacagcatcctggtgttgggctaatagccaaatacgcttttagtatttgtt 64
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcagaaacagcatcctgatgttgggctaatagccaaatatgcttttagtatttgtt 264

                                                                       
Query: 65  tatgtatacctttcacttttatttcagatgtaaaaaaacagtaaacagctaagattccag 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgtatacctttcatttttatttcagatgtaaaaaaacagtaaacagctaagattccag 324

                                                                       
Query: 125 atagtactgacagtgtttggagaattttcctttatatgatttagtggtgatatttatcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagtactgacagtgtttggagaattttcctttatatgatttagtggtgatatttatcca 384

                                                                       
Query: 185 ggattcatcattcattagtttcttgataataattaaaaacaaaacatgcttcatgtatgg 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggttcatcattcattagtttcttgataataattaaaaacaaaacatgcttcatgtatgg 444

                                                                       
Query: 245 aaaaatctgccaggtatctgaaaagtcttttggttttgctctctgaatttatcctcccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaatctgccaggtatctgaaaagtcttttggttttgctctctgaatttatcctcccta 504

                      
Query: 305 gatttcattca 315
           |||| ||||||
Sbjct: 505 gattccattca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)