Query= MSMg01no278_a24.b1 MSMg01no278_a24.b1 CHROMAT_FILE:
MSMg01no278_a24.b1 PHD_FILE: MSMg01no278_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:17 2005
(316 letters)
>mm_chr10_42344465_42345180
Length = 716
Score = 528 bits (273), Expect = e-154
Identities = 297/305 (97%)
Strand = Plus / Minus
Query: 9 gaattcagcatcgtctgaggaagagtagtctaagtcagcatgcactccttgggcccattc 68
||||| |||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct: 513 gaatttagcatcgtctgaggaagactactctaagtcagcatgcattccttgggcccattc 454
Query: 69 caggaaatactcgtgaaaagttagttgaaaaaaaagataccacatgcaaaccctaatttt 128
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caggaaatattcgtgaaaagttagttgaaaaaaaagataccacatgcaaaccctaatttg 394
Query: 129 gcttttaggttcaatccccgatttctttgcagtttctgattagaaaatgtttttctgatt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gcttttaggttcaatccccgatttctttgcagtttctgattagaaaatgtttttctgatt 334
Query: 189 tagtctttgcaactgggtatgtgacatcttaatttaattttgaggtttacttcttcagtc 248
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 333 tagtctttgcaactgggtatgtgacaccttaatttaattttgaggtttacttcttcagtc 274
Query: 249 tgattgtcatgaaaactttctctatggcacagcaaagcctggggatggtaggacattcgt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 273 tgattgtcatgaaaactttctctatggcacagcaaagcctggggatggtaggacatttgt 214
Query: 309 aatta 313
|||||
Sbjct: 213 aatta 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_a24.g1 MSMg01no278_a24.g1 CHROMAT_FILE:
MSMg01no278_a24.g1 PHD_FILE: MSMg01no278_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:17 2005
(280 letters)
>mm_chr10_42187260_42187939
Length = 680
Score = 464 bits (240), Expect = e-135
Identities = 275/296 (92%), Gaps = 16/296 (5%)
Strand = Plus / Plus
Query: 1 aaagtaaaatgaagggcctgatgtgcccccc-cccactttcaaataattaagtatttgaa 59
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 185 aaagtaaaatgaagggcctgatgtgccccccgcccactttcaaataatgaagtatttgaa 244
Query: 60 agcaccttgatttacctatgactttcttttgtaactataaaaacatcatgggaccattag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agcaccttgatttacctatgactttcttttgtaactataaaaacatcatgggaccattag 304
Query: 120 cacattggaacatggtatttgggacaa---------------atcattacattcctagtt 164
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 305 cacattggaacatggtatttgggacaattcctataactaggaatcattacattcctagtt 364
Query: 165 ataaattcaacaaagaatatatatctgtaactaaatatatgcacagacatattcacagca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ataaattcaacaaagaatatatatctgtaactaaatatatgcacagacatattcacagca 424
Query: 225 gtatcataactagtattaattaaacactgtaaaggcacccccagtgcctgaaaata 280
||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||
Sbjct: 425 gtatcataactagtattaactaaacactgtaaaagcaccccccgtgcctaaaaata 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
