BAC Information

Click to search

BAC

Clone NameMSMg01-278N22
Chromosome10 (Build37)
Map Location 73,963,356 - 74,071,868
singlet/doubletdoublet
Overlap genePcdh15
Upstream geneLOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278N22.T7 (MSMg01no278_n22.b1)MSMg01-278N22.TJ (MSMg01no278_n22.g1)
ACCAG416387AG416388
length719728
length of high quality
(start - end)
315 (46 - 360)347 (382 - 728)
definitionCHROMAT_FILE: MSMg01no278_n22.b1 PHD_FILE: MSMg01no278_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:20 2005CHROMAT_FILE: MSMg01no278_n22.g1 PHD_FILE: MSMg01no278_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,071,559 - 74,071,868)(73,963,356 - 73,963,700)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGGGCACCTTTAACAGAGCACTGTCACTTAGACACAAATCAA
TGCATAATTAAAACTACTATCTACTCCTCCTTAGAGCAAAAGAGCTCTTT
CCCCTGCCCAGGTCTCAAGTGACCCAATGTGGACCACATTTTCACTTGTG
CTCTCCAGTCACATTCTTACGGTGCTTGCTGCAGGCCCTTGTTACAGATA
GTCTTGCTGTAGGCCTTTGGTGCTATCTGGCAACTGTGTTCCACCCTGAT
TTCTGTTCTCAACCTGATCCTGCAGCTTCAAAACTCTCCCAATTCATCTC
TATGTGCTGTTTCTTGTCCCCCCCCCCCCCTAGCACCTGGGAGCTGCTGG
CATGTGGGGAGCATTTTTATGGAAACAACAGAGAACCCCTTGTCCTTCTC
TTAATTGCTTCATGGTCACATAGACCATGCAATTGTCCTATCCCTCAGTC
TTTGTAATTCTATGAATCCCACATTTTATATTGATGTAAAATTGCAATAA
TTTTTACTGCCTTTGACAGGAGTCTGTGTTCTTGGTATCAGTTTAGTCAT
TAAATTTGTAGTGAATAAGAACTCTAAGAACTTAGAAATTACAAGGGTGA
CTTTCAGAAGGTTTTTAGACAAATAGACTCTGGTACAACTGTTAAGAAAC
TATTCTGATATTAGGAAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACTAACTAGATTATGATCCAG
ATACTATTTTGAAAAATAAATTTAAGGATATCTAATAATGTATATTATAA
GAAGAATTTCAGGTGTATGAGTTAATAGTGGAAGATTTGTTTGAGCTAAG
TTTTCTAAGGAGTCTTTTCTTTTTTTTTTCCTGTAATCAATTGCTTCTGA
AATTAAGCAGTGCATTTTAATTATATTTAATAGAAGGAAAGGAAAAAAGG
ATTCACCATAAACTATTATTCACAGAGTGAAACTTGAAAAAAAACTTTTT
AAAAAATATGTTTTTACCCCCCCCCCCCCCTTTACTCACCAGATGCTATT
AACAAATTCCCATTAGTTGTCAAAAGTTAAAAATGCATACAATTCGCGCT
TTAAATTTCACACTTCTTGCATTCATGAAGTTCGTCAATCTACTACAATA
TCTCAGTTTTGTATTGTCTACAGTTTTACCTCCATCCATCTTCATGGTGG
CTTATACCCACCTCATTCAAACTGATTATAAATCTATGGCAATGCCCATG
GGACTTCCTTCCGACTAATTTGTAGTAAATGCACTTCATATTCAAGTTAT
ATTTCACTGCAGAGAGAGAATGCAATTTGTCAAAAGATATAACAGATATT
TTTCCAGAGCATAGAACAATAATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_n22.b1 MSMg01no278_n22.b1 CHROMAT_FILE:
MSMg01no278_n22.b1 PHD_FILE: MSMg01no278_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:20 2005
         (315 letters)



>mm_chr10_74071355_74072069
          Length = 715

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgggcacctttaacagagcactgtcacttagacacaaatcaatgcataatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcatttgggcacctttaacagagcactgtcacttagacacaaatcaatgcataatt 455

                                                                       
Query: 65  aaaactactatctactcctccttagagcaaaagagctctttcccctgcccaggtctcaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaaactactatctactcctccttagagcaaaagagctctttcccctgcccaggtctcaag 395

                                                                       
Query: 125 tgacccaatgtggaccacattttcacttgtgctctccagtcacattcttacggtgcttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgacccaatgtggaccacattttcacttgtgctctccagtcacattcttacggtgcttgc 335

                                                                       
Query: 185 tgcaggcccttgttacagatagtcttgctgtaggcctttggtgctatctggcaactgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgcaggcccttgttacagatagtcttgctgtaggcctttggtgctatctggcaactgtgt 275

                                                                       
Query: 245 tccaccctgatttctgttctcaacctgatcctgcagcttcaaaactctcccaattcatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tccaccctgatttctgttctcaacctgatcctgcagcttcaaaactctcccaattcatct 215

                     
Query: 305 ctatgtgctg 314
           ||||||||||
Sbjct: 214 ctatgtgctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no278_n22.g1 MSMg01no278_n22.g1 CHROMAT_FILE:
MSMg01no278_n22.g1 PHD_FILE: MSMg01no278_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:20 2005
         (347 letters)



>mm_chr10_73963156_73963902
          Length = 747

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttactcaccagatgctattaacaaattcccattagttgtcaaaagttaaaaatgcataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactcaccagatgctattaacaaattcccattagttgtcaaaagttaaaaatgcataca 260

                                                                       
Query: 61  attcgcgctttaaatttcacacttcttgcattcatgaagttcgtcaatctactacaatat 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcacgctttaaatttcacacttcttgcattcatgaagttcgtcaatctactacaatat 320

                                                                       
Query: 121 ctcagttttgtattgtctacagttttacctccatccatcttcatggtggcttatacccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagttttgtattgtctacagttttacctccatccatcttcatggtggcttatacccac 380

                                                                       
Query: 181 ctcattcaaactgattataaatctatggcaatgcccatgggacttccttccgactaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcattcaaactgattataaatctatggcaatgcccatgggacttccttccgactaattt 440

                                                                       
Query: 241 gtagtaaatgcacttcatattcaagttatatttcactgcagagagagaatgcaatttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gtagtaaatgcacttcatattcaagttatatttcactgcagagagagaatgtaatttgtc 500

                                                        
Query: 301 aaaagatataacagatatttttccagagcatagaacaataataaa 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagatataacagatatttttccagagcatagaacaataataaa 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)