Query= MSMg01no279_b23.b1 MSMg01no279_b23.b1 CHROMAT_FILE:
MSMg01no279_b23.b1 PHD_FILE: MSMg01no279_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:38 2005
(704 letters)
>mm_chr10_28052159_28053262
Length = 1104
Score = 739 bits (382), Expect = 0.0
Identities = 466/498 (93%), Gaps = 10/498 (2%)
Strand = Plus / Plus
Query: 5 gaattctatagtcactaccaacacagtggaaacagagaagactgaccaggagaggttgtg 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatagtcacaaagaacacagtggaaacagagaagactgaccaggagaggttgtg 264
Query: 65 gctggagtggatgaaataaagaggaaccacatacccctgacta-ttttaccccattttta 123
||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 265 gctggagtggatgaaataaagaggaaccacatattcctgactattttttccccattttta 324
Query: 124 ttgacttttggcagatgcagggatatggcaaatgaatggggtttcatgttaaaaactctg 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgacttttggcaggtgcagggatatggcaaatgaatggggtttcatgttaaaaactctg 384
Query: 184 tcgttctgcctcataatatctcatcagtgtgctaattgaaatg----acagtaggtttta 239
|||||||||| ||||||||||||||||||| || ||||||||| | | | |||||
Sbjct: 385 tcgttctgccccataatatctcatcagtgtactcattgaaatggcaaaaatt---tttta 441
Query: 240 aacaatttaagtgtatttaaacgttagattttttttttcaaagaaaaataaagcctaaag 299
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 442 aacaatttaagtgtatttaaacgttaga--ttttttttcaaagaaaactaaagcctaaac 499
Query: 300 tctatttcaatgaaatcccctggacctgttggcttcttcctgtcaggaagttatctgatg 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctatttcagtgaaatcccctggacctgttggcttcttcctgtcaggaagttatctgatg 559
Query: 360 aatttaatggaaatccactccaggctgcagggcctgatgcagtatggctccctccgtctc 419
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 560 aacttaatggaaatccactccaggctgcagggcctggtgcagtatggctccctctgtctc 619
Query: 420 ttcctgttctgaactcactttaaaaatgaagtagtggaaaagtatatagctatcttaatg 479
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 ttcctgttctgaactcattttaaaaatggagtagtggaaaagtatatagctatcttaatg 679
Query: 480 tggttgtaggaggagtca 497
||| ||||||| ||||||
Sbjct: 680 tggctgtaggaagagtca 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no279_b23.g1 MSMg01no279_b23.g1 CHROMAT_FILE:
MSMg01no279_b23.g1 PHD_FILE: MSMg01no279_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:38 2005
(634 letters)
>mm_chr10_28204322_28205356
Length = 1035
Score = 833 bits (431), Expect = 0.0
Identities = 467/483 (96%), Gaps = 8/483 (1%)
Strand = Plus / Minus
Query: 1 ctgagcactgtcagttagctcaggatctacatgaaagaatgacccctgatcccctaagaa 60
||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 483 ctgagcactgtcaattagctcaggatctacatgatagaatgacccctgataccctaagaa 424
Query: 61 acctgggaagagacactgtgttgtgttatgatcagtgtatctttaatttataatattaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acctgggaagagacactgtgttgtgttatgatcagtgtatctttaatttataatattaag 364
Query: 121 atgggtgacaggcacttaataaatggtcaaaatttgcag-aaaaaatttgattaagtaaa 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 363 atgggtgacaggcacttaataaatggtcaaaatttgcagaaaaaaatttgattaagtgaa 304
Query: 180 caaagggtcatataagttatacagcacagtctgacaataataatgataataatacctgaa 239
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 caaaggatcatataagttatacagcacagcctgacaataataatgataataatacctgaa 244
Query: 240 gaaaaagatggcttcacttaacatttttagggatttcaaatagttttaaaatttatttat 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 243 gaaaaagatggcttcacttaacatttttagggatttcaaatagttttaaattttatttat 184
Query: 300 ttatttatgtttgttttgctgacttttttttttt-------gaatgtgtgtctgtgtagc 352
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 183 ttatttatttttgttttgctgacttttttttttttttttttgaatgtgtgtctgtgtagc 124
Query: 353 acatgtgtgcagtgcccgaggatgccagagagaatatcatatttcctgtgacaggagttt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 acatgtgtgcagtgcccgaggatgccagagagaatatcatatttcctgtgacaggagttt 64
Query: 413 tagatatttgtgagtcaacaggtgagtgctaggggttgaaccagattcttctaaagggct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tagatatttgtgagtcaacaggtgagtgctaggggttgaaccagattcttctaaagggct 4
Query: 473 gtt 475
|||
Sbjct: 3 gtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
