BAC Information

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BAC

Clone NameMSMg01-279J24
Chromosome10 (Build37)
Map Location 108,450,181 - 108,450,469
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r12a, Pawr, EG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J24.T7 (MSMg01no279_j24.b1)MSMg01-279J24.TJ (MSMg01no279_j24.g1)
ACCAG416937AG416938
length718748
length of high quality
(start - end)		49 (112 - 160)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no279_j24.b1 PHD_FILE: MSMg01no279_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:16 2005CHROMAT_FILE: MSMg01no279_j24.g1 PHD_FILE: MSMg01no279_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGTCACAAAGTGCCGAGGTGCACGGAATTCCAGNGGATTTACGGGAGGG
AGGGGCTATTAGAGGAAATAAGTTTAAAATCGTTGTGATATAATCTAAGC
GTTGGGTTTGCTTACCACTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCACACACTCTATCTCTAACACAAATAACTTCACACTACAA
ATACTTCTTCATTAAAATACACACTCCATTTTTTTCCTACCGTGGTCTCA
CTGAATGAGGGAGTCTCGCTTTCGCAGACGCACATAAGAAAGGATAAATA
GGTTGGCACCAGAAAAAAAACCAAACTAAAGAAAGTTTATTTGGACACAG
CAGGCACGCGAGATTAGAATGAGAAGTGGAAGCAAGTCTCAGGACAAAAA
GAAAAAAAAAAGATGAGGGGGGGGGGGGGGCACAAGGACGGAAAGGCACT
CATAGAAAGAGTAGGATGAGTAGGGAGATGAGGAAGAGCCATAGACCTAA
GATGAAATGGAAGGAAAAGGAGTCAAGAAGAGAATAGAATATGGAGGAAA
TGGCAAACAAGAATAATGGGGGAGGGTGGGGAAAAAAGAAAGAACATAAA
AACGGAGGAAGAACAAAAAAAAAGGAAAGAGGATATTTATTTAAGAAAGA
AAAGGAGAATAAAGAAGAAAAAAAAGAGGAAAGAGAGGAAGGATAAAGAG
AAAAAGGAAGAAAAAGGA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAATGGCTGACAACAATATGAA
AATATAAAGGAGAATCAAAAACTTTGGTCCCAAAACAAAACAAACAAACA
AACAAACAAAAAACCCAAAAATAAAACAAAACAAAACAACAAAAAATCTT
ACTTTGTATCCAGTCAGTATATATAAATAATCTTTTTAATATTGATAAGT
AAAAATGCTACTAATTCTAAAATTAAGTACAGTGAAATATGCCCAAAGCC
TATTTCTTATTATAGGCAGCTGTCCTCTTCAAGAAACACTGAGGGGTGGG
GTGGGGGAGTTCTGATTTTTTTTTGTCCCCCACCCCCCTTTCCACTGAAG
GACACTGTGGGTAGCCTATGATGTGGACAGAAAAAACGAAATTGCCTAAA
ATGATGATAGACCCAGGGTTTGGAACAGAAATTCAAAAATTCTATATTCC
CATTCCATTCATTAACGTGTTCTTCTTTTTTCTACATGTTGCTGTTGGTA
ACTGGGAAAAATATGTAGCTTTTAAACTAGGAAAAAAACTAAAGAGAGAG
CAATGTATATTTTTAAAATAAAAATTTCCATTAGGTGGATATTATAATGC
TTCTCTCATGCACTCATCTTCATTGGAGAATACAGACAAATACTCAGTTT
TTCTACCTGCTTTTACTCTGACCCACTCCACTCCCCCTTCTCTTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j24.g1 MSMg01no279_j24.g1 CHROMAT_FILE:
MSMg01no279_j24.g1 PHD_FILE: MSMg01no279_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:16 2005
         (291 letters)



>mm_chr10_108449861_108450551
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaatggctgacaacaatatgaaaatataaaggagaatcaaaaactttggtcccaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccaaatggctgacaacaatatgaaaatataaaggagaatcaaaaactttggtcccaaaac 550

                                                                       
Query: 61  aaaacaaacaaacaaacaaacaaaaaacccaaaaataaaacaaaacaaaacaacaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaacaaacaaacaaacaaacaaaaaacccaaaaataaaacaaaacaaaacaacaaaaaa 490

                                                                       
Query: 121 tcttactttgtatccagtcagtatatataaataatctttttaatattgataagtaaaaat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 489 tcttactttgtatccagtcagtatatataaataatcttcttaatattgataagtaaaaat 430

                                                                       
Query: 181 gctactaattctaaaattaagtacagtgaaatatgcccaaagcctatttcttattatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctactaattctaaaattaagtacagtgaaatatgcccaaagcctatttcttattatagg 370

                                                            
Query: 241 cagctgtcctcttcaagaaacactgaggggtggggtgggggagttctga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagctgtcctcttcaagaaacactgaggggtggggtgggggagttctga 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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