BAC Information

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BAC

Clone NameMSMg01-279N13
Chromosome10 (Build37)
Map Location 72,917,148 - 72,917,461
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279N13.T7 (MSMg01no279_n13.b1)MSMg01-279N13.TJ (MSMg01no279_n13.g1)
ACCAG417095AG417096
length764919
length of high quality
(start - end)		314 (52 - 365)65 (76 - 140)
definitionCHROMAT_FILE: MSMg01no279_n13.b1 PHD_FILE: MSMg01no279_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:33 2005CHROMAT_FILE: MSMg01no279_n13.g1 PHD_FILE: MSMg01no279_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAACTTTAAGCCCTGGAACCTTAATAAAGCGGATCCTGGTGGTAG
ACTATGTACCCCATAATTCCAGCCCTTGGGAAGTGGCCATTTCATATTAC
ATGTGAGTTTGAATCTTCTATAACTGGGCTTCTGGTTACTTTATGGGCTC
CTAATTCTACCATTCTTCTCTACCCCTATCCTTTCCAACTCCCAACACAA
GGTAGAAGAGAAAGGATAGAGGAGAAAGGGGGGATCAATATCAGTAGAGT
ACTTTATGTTGATTTAGGGGCATTGTATTCCTTGGGGCAAGTCCATTCTT
CTTTCTTAGGATATCTTTTTCCAGCAACCACCACCAGCAGCAGCAGAGGG
AGCAGCAGCAGAGGGAGCAGCAGCAGAGGGAGCAACAGCAACAGAGGGAG
CAGCAGTCTCTTTAAGGTTCTGACCTTGACACTGACTGACTTGTCTGAAA
TCAAACAAAAACAAGATTACTAATCCTGTAGAGACATGCTGCCACAAAGA
AAAAAAAAATCCAAATAGAAACAACTCATCCAGAAAACAAAAAGAAATGA
AAAGACAAAGAATCTATAAGCAAGGACTTTTAAACCTCNTTATGAATATT
CCATTAAGGATACTATTATGTATGATAATCATTAATTCTCCTTAGATAAG
ACAAATAAATAACGGATCCTAAATTCTCTTCTACTTCTTCACTCTAGCAC
ATAAATCTTAAATA

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCGCATTCACAGAAGTTAGGATATATATAGAGA
TAGATAGATAGATAGATAGATAGATCCCCCAGATAGATATCATAGCATAG
ATAGATAGATGGTAGATGTNNATGTNNNTTCTTNNTTNTTCTTTTTCTNT
TCTTTCCCCCTCTCANTTATTTTTAATTCTCTCCTCCCCCCTCTACCGCA
TTCCCCCCTCCCCCCCTTTCCCCTCTCCCCTTCGCTATTCTCCCCCCCCC
CTCCCCCTCCCCCTTCTCCCCTTCCTTTCCCCTCCCGCTCCCCCATCCAC
CTCTCTTTTTTTCTTTCCCTCCGATCCGCTTCTTCTCGATCCGCCCGGAG
AAGCTTTTGGGTGGNTTCCCCCAAAGACAAAAACCCCCCTATTTTTTTTT
TTTTTTTGTATTTGTTTGGACTTTTCCTTTCTTCCCTCCAAAAAAAAAAC
ACATCCTCCTTCCGGTGGCTCTCCCTCCCCCCTTCCCCTCCCCCCCCTTC
TCCCTCCCTCCCCCTCCTCTCTCTCTCCCTTCTTCGTCCTCTTCTTTTTC
CGGCTCTCTCTCTCTCCCCCTCCTCTGTCCCTCTCCCCTCTCCGCCTCCC
CCCCTTTTCCTCCTTCTCCTCCCTCTCCCCCCCCTCCCCCCCTCTCCCTC
TCCTCCCTTCCTCCCCCTTTTCTTCTCCCTCTTCTCCCTCCCTCTCCCCC
TCCCCCTCTTCCCTCCTCCCCTCCCGCTCTCTCTCTCTCTCCTTCCCCTC
CCGCCTCCCTCCTCCCATCCCCCCCTCCCCCTCCTCCTCCTCCTCCCCTT
TCCTCTCCCCTCTTTTCTTCTCTCTTCCTTCCTCCTTTCTCATCTCCCTC
TCCCCTCTCCTCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_n13.b1 MSMg01no279_n13.b1 CHROMAT_FILE:
MSMg01no279_n13.b1 PHD_FILE: MSMg01no279_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:33 2005
         (314 letters)



>mm_chr10_72916948_72917661
          Length = 714

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%), Gaps = 2/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccaactttaagccctggaaccttaataaagc-ggatcctggtggtagactatgtacc 59
           ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 201 ttcccaactttaagctctggaaccttaataaagctgg-tcctggtggtagactatgtacc 259

                                                                       
Query: 60  ccataattccagcccttgggaagtggccatttcatattacatgtgagtttgaatcttcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccataattccagcccttgggaagtggccatttcatattacatgtgagtttgaatcttcta 319

                                                                       
Query: 120 taactgggcttctggttactttatgggctcctaattctaccattcttctctacccctatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taactgggcttctggttactttatgggctcctaattctaccattcttctctacccctatc 379

                                                                       
Query: 180 ctttccaactcccaacacaaggtagaagagaaaggatagaggagaaaggggggatcaata 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttccaactcccaacactaggtagaagagaaaggatagaggagaaaggggggatcaata 439

                                                                       
Query: 240 tcagtagagtactttatgttgatttaggggcattgtattccttggggcaagtccattctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 tcagtagagtactttatgttgatttaggggcattgtattccttggggcaagtccaatctt 499

                          
Query: 300 ctttcttaggatatc 314
           |||||||||||||||
Sbjct: 500 ctttcttaggatatc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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