BAC Information

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BAC

Clone NameMSMg01-280F20
Chromosome10 (Build37)
Map Location 108,625,533 - 108,625,846
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r12a, Pawr, EG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497, LOC100042502
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280F20.T7 (MSMg01no280_f20.b1)MSMg01-280F20.TJ (MSMg01no280_f20.g1)
ACCAG417477AG417478
length749753
length of high quality
(start - end)
318 (45 - 362)142 (78 - 219)
definitionCHROMAT_FILE: MSMg01no280_f20.b1 PHD_FILE: MSMg01no280_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:11 2005CHROMAT_FILE: MSMg01no280_f20.g1 PHD_FILE: MSMg01no280_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGGAGTGTCATTATTTTGACTTAAGGTTTCTTGGTCCCTGTTAA
CATGCAAACAGGTCCTGGAGCCCACACATATTTATGTCATTCCTGTTTGT
GAGAAATTTTCAGTACCTTTTCTTGCACCTGGTTTTACTATTCAGTAAAT
AAGACCTTGAAAAAACGTGAGAGGGCTTAGGGCCAGAGTACATATCACAA
AACTGTCTGCTGCATTTTAGTGTGATTATCTGCTTCTGAAGTTTAGAATT
CTCATTTTCTTCTGTCTTAAGATGTTTTAAAAATATCTATATGTAGCAAC
TTAACCCTATATACATTCATTGCATTACCGTCCCTAACACAAAATTTTAG
TAGGAGATGATAAGCGTTTTACTGAAACAAAAAGCTGGGAAGTAACCACT
AATTTCAGAAGCCAAATTATGAGAGACATATTTTCCGTGGCATATGGCTC
CTTGGACGTCTTCCTTGCTTGAGAAACTGGCAGTTCTGATGTTACCTCTG
CCTAGTCACATGGTTGGCTTTGCTGATATGCTGTCAGAAGATTCCAGAAG
GCGTTAGAATCCCCTGTTTGATTCACATTAGGTCTTTGGTGTCACTACAA
GTAACAGAGTCACTTTCTTCCTCTATCAGAATCACCTAAAATTTCAGTGC
AGTATTTGATTGAATATTTTGCTTTCTATGTATCAGAGTCCCCCTGCCC
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAATTTGAAGGTAAAGATG
GACATATCTGGCTTTAAGAATTTTAACACGGAAGGGTAAACATTCAGCAA
ATGAGATGCAGTGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTGGAAAAACAAGGAGAGTCCCAGGCTGAATATCTGACTAAGGAGCA
TCAGGAACTGAACTGGAAAAATGGTCAAGTACTTTATAGACAATGGGAGG
CATTGGGGCACAAAAAAAATTGGAACTTTTGAGTTGGGATTCCAGTCACA
GGTTCTACAGGGATTGGGGTAAACTCCGGNACAAAACCCTTTAAAGTTAT
TTAAGGAGATGGATTTTACTGGCTTCATAATGAATNNAAAAAAAGGGCGT
GGGGGGTAAATCTTAATGGTTCAAAACTATTCAAAAAATGGGATGGGGCC
TTTTCCTCCTTATCACTAATGGTGAAAGTAAAAAAAAAAGATGGATTAAG
TTATTCCTGGTAGGCTATGGGCTTTAATCTTCCTAAAAATAAAAATAGTA
CCCTGGATATTTTTAAGGAAAGCCAAGATTAAGAAGTATAAATTATTATT
AGAGGTTTAAGTGTAAAGAAATGGGAAAGGGATGGGATTTACCTGTACAG
AGAGAAAGACCACTTAATTCCTAATCCATATTTAAAATCCTTTTAAAGGG
GCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_f20.b1 MSMg01no280_f20.b1 CHROMAT_FILE:
MSMg01no280_f20.b1 PHD_FILE: MSMg01no280_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:11 2005
         (318 letters)



>mm_chr10_108625330_108626047
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctggagtgtcattattttgacttaaggtttcttggtccctgttaacatgcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctggagtgtcattattttgacttaaggtttcttggtccctgttaacatgcaa 263

                                                                       
Query: 64  acaggtcctggagcccacacatatttatgtcattcctgtttgtgagaaattttcagtacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaggtcctggagcccacacatatttatgtcattcctgtttgtgagaaattttcagtacc 323

                                                                       
Query: 124 ttttcttgcacctggttttactattcagtaaataagaccttgaaaaaacgtgagagggct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttcttgcacctggttttactattcagtaaataagaccttgaaaaaacgtgagagggct 383

                                                                       
Query: 184 tagggccagagtacatatcacaaaactgtctgctgcattttagtgtgattatctgcttct 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 tagggccagagtacatatcacaaaactgtctgctgtattttagtgtgattatctgcttct 443

                                                                       
Query: 244 gaagtttagaattctcattttcttctgtcttaagatgttttaaaaatatctatatgtagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagtttagaattctcattttcttctgtcttaagatgttttaaaaatatctatatgtagc 503

                         
Query: 304 aacttaaccctata 317
           ||||||||||||||
Sbjct: 504 aacttaaccctata 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)