BAC Information

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BAC

Clone NameMSMg01-280K13
Chromosome10 (Build37)
Map Location 17,336,891 - 17,337,252
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280K13.T7 (MSMg01no280_k13.b1)MSMg01-280K13.TJ (MSMg01no280_k13.g1)
ACCAG417696AG417697
length749749
length of high quality
(start - end)
585 (70 - 654)362 (383 - 744)
definitionCHROMAT_FILE: MSMg01no280_k13.b1 PHD_FILE: MSMg01no280_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:33 2005CHROMAT_FILE: MSMg01no280_k13.g1 PHD_FILE: MSMg01no280_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCATCAGTACCAAATACAAAACAAGACTATGTATCAGGGCTGGA
GAGATGGCTTGGTGGTTAAGGACACTGACTGCCCTTCCAGAGGTCCTGAG
TTCAATTCACAGCAACCACATGGTGGCTCACAACCATCTCTAATGGGATC
TGCTGCCCTCTTCTGGTGTGTGTGAAGACACTGCAGTGTATTCACATACA
CACATCTTTTTTAAAAAGTTATTAAAATAAAAAAAGACTTTGTATTGGAT
GTGGCATCCAAAAGGAAAAGAAGAATTGGACAAAACTCCAGCGTGTTTGA
GACAAGGCCTCTTTATGTAGCCCTGGCTGACCTGCAACTTGCTATGTATA
TCAGACTAGCCTGGAATTCTCAGAAATCTGCTTGCCTCTACTTCCTGGGT
GTGGAATGAAAGGCATGTGTCACCATGCCTGACTGAAATTCCTTTTCTTC
TTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTAAAGTAGAG
AATATTAGGACGAACATAACGGAGGGATAAGTTTTGGACAGGTAAAGTTT
TATAAGCCTGAGTAAAAGGGTCATTAAATAGTTGAATTATGAATCTAAAG
TTGAATGAATAGCCTGGACTTAAAATATATCAATGTAAAAGTCTGCAGC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTTAAAAAAATTAGTTTTCA
GGCTATTTATCAATCCTTCATTAGGCACCACTTATATTAATGGCTAAGAA
TAAAATTTAAGTAATGAAGGGGTTAAAAAATCATCATGCAAGCTAATCTT
ATGCAAAGCCTGCAGCCAATCTCATTGAATTTTAAGTAAGGTTGTGAGTT
CTTCCTTCTTTCCAGCTCAAATATATTTTACTAAACATGAAACTCAGTTT
TTCACTATATATTTAAAAACTCATTAATATTCATTATGGCATACAGATGG
ACCAAAGATGGCTTCTCCTGATACTTCATTCATCCTGATTCTTGGTCTTT
GAGAAGAAAAAAAGGTGGACCTGCATTAAACTCTGGCCTTGACCACTCTT
AGGGCAAGTAATTCCTAAGATATCACCAATATTCAGTAAAACAAATACAT
TTTAGGAGCTCAAAGTTAACTTTCTTTAATAATCCTATAATGAATTTTTC
CTAGGAGCATTTGCCTGAGGAATTTGGAATCTGTTATTGGAATATAATAA
ATTCTAAGTTTTGAAAAGGCCACTTGGCTCAGCATGGCCTATAGTTTCTA
ATTCACTTATTGTAGATCCTTACAGTTTCTCAACTTATAAATGCATCTAT
TTGCCTCTATGGAATAAAAAGATAATGGTCTTAGCTTTGGTAGAGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_k13.g1 MSMg01no280_k13.g1 CHROMAT_FILE:
MSMg01no280_k13.g1 PHD_FILE: MSMg01no280_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:33 2005
         (362 letters)



>mm_chr10_17336691_17337452
          Length = 762

 Score =  700 bits (362), Expect = 0.0
 Identities = 362/362 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgattcttggtctttgagaagaaaaaaaggtggacctgcattaaactctggccttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgattcttggtctttgagaagaaaaaaaggtggacctgcattaaactctggccttga 260

                                                                       
Query: 61  ccactcttagggcaagtaattcctaagatatcaccaatattcagtaaaacaaatacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactcttagggcaagtaattcctaagatatcaccaatattcagtaaaacaaatacattt 320

                                                                       
Query: 121 taggagctcaaagttaactttctttaataatcctataatgaatttttcctaggagcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggagctcaaagttaactttctttaataatcctataatgaatttttcctaggagcattt 380

                                                                       
Query: 181 gcctgaggaatttggaatctgttattggaatataataaattctaagttttgaaaaggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgaggaatttggaatctgttattggaatataataaattctaagttttgaaaaggcca 440

                                                                       
Query: 241 cttggctcagcatggcctatagtttctaattcacttattgtagatccttacagtttctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttggctcagcatggcctatagtttctaattcacttattgtagatccttacagtttctca 500

                                                                       
Query: 301 acttataaatgcatctatttgcctctatggaataaaaagataatggtcttagctttggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttataaatgcatctatttgcctctatggaataaaaagataatggtcttagctttggta 560

             
Query: 361 ga 362
           ||
Sbjct: 561 ga 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)