BAC Information

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BAC

Clone NameMSMg01-288A03
Chromosome10 (Build37)
Map Location 99,222,126 - 99,222,807
singlet/doubletsinglet
Overlap geneCsl
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
Downstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288A03.T7 (MSMg01no288_a03.b1)MSMg01-288A03.TJ (MSMg01no288_a03.g1)
ACCAG417949AG417950
length7371,292
length of high quality
(start - end)		686 (48 - 733)---
definitionCHROMAT_FILE: MSMg01no288_a03.b1 PHD_FILE: MSMg01no288_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:59 2005CHROMAT_FILE: MSMg01no288_a03.g1 PHD_FILE: MSMg01no288_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGAGCGTATTCTGACCTATTGAGATACAAGGAAAACAAACT
ATCTAAAAGGCCAGTTATAATTTGAAATTATATAAACTGATGAAAAATAT
GAGTACCAGCCCAGCAGAGTTCCAAGACAATTCCCGCTCATCTGTCTTGA
AGGTCAATATTGTGATAGAGCCAATGCTAACTTTTGAATAATTTGGCCAA
GTTGAGGCAAAATGTCCCTGATGGATAATTGTTTTATTCAAAAAGCAATG
CAAGAAGCCTAGAATTCTGGACAGTAGTGGTAAAGAGGAAAACGAACAAG
TAAAAGAGGGAAAAGTTGGAGGGGAGATACTGTGAGATAAGCTCACATGT
TCCCCACTCGGGGGCACCAGTATCCCAAGGGGATTGAAGCCAGGAAACAG
TTGCTACAGCTTCCTTTTCCTTTGAGTTGAAAATTCCTGATGTCACTGCC
AGGCCCTTCTTCCTCCCTAGTCTATAAGTACGAATGCGTGTGCGCGTGGC
CTCTCATTCCGGATGCAGTCTACCATGTGGGAGAAGTTCTAAACCGCCAC
ATAGGTTGCGGTTACCCCTCCTAAGTAAGTTGAACTTTGAAAATGTATAA
TTACTCACCAAGGCTAAGCTGACCCCATTTCTCAACCGACTGAGCCTCTT
GGAGGAACGTTTATTACGTAATCACTACCCGTGGAAA

CGACAGGGAGGAGTGGCGGGACCTATGATCCGCGCTGTGCGTGCTCCTCT
TCCGCCTTTTCTTCTCCTACCCCCTCCCCTCTTCTTCTCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGGGNNAGCCTGAATGACCG
CNNNNNAAGAAGAGGAGAGGCGCAGGACGGAGCCNNCCCCTCCTAGGACG
GGCGTGCCCCNNCCCTCCCCCCTACGGCGAGAGCGTCTNNCCTAACTGAG
AGGTGAGCGCGTGCGCGAGCGCCCTTATCTCGCCTCCCACCCCTCTATCC
CCACCATTACCATGGANCTCTCNCGTTCGGCCAGTTANTGGTCTCTGTAG
TGACGAGCTTGGTGTTGTGCCACGCGCGTCACGCGACGGGCGCACTATTG
CACACGCGACGCGCGCTCTACACTGGGCGGCGCCGCCGCGTGCATGCTCG
CCCGGATAAGAAGAGAGGTTCTATACCCGAAGGACGCGTGGGGGGAGGCG
TGTAGTCTCCGCAGAGTGAGCGGATCACACTCTCAGGCGGGTCCGCTCAC
ACGGAAGGCGCCGCCACACAGCCGAGGCTGCCTCCCCGCCCGGGGTGGTC
GGTNGGTCCGCCCGTGGTGCGCCTGCGCCGCGAGGACAGCAGAGACGTAA
AATTTCTGATCCTCTCGCCTCAACCGGCGCGCCTCTGGCGAGCGGTTACA
ACCCGCGACCCCCATCTCACACACGCAGTCTGCAGTGGTGCAGCTACGAA
GACAACACGTGGCGCGGGTATATTCTCCCTCGCTCTCTCCCTGCCCGCCC
CCCCGCCCTCGAATAGTAACGACCGACCAGAACAGATATATCTCTCTGTG
CACGCTGGCGCTCGCGCGGAGTGGTGCGCGATCTCTCATCTGATACGTCG
GCGTGATGCCCTCTCACTCACACCCGCCNGTAGCCACCCTCGCTTCGCCG
ATCACGCAGTCGACAACGTCTANATGTGTGACGCCGGCGCGATGGGTCTG
ACAGTGCTCCAATCGTAGTCTTATCGCACGCGCGTGTAAGANTCTCTCGT
CCCTCTTCTGTTTCTTACGACTCCTCGCGCGCGCCGTGCCCGCGCTCCGC
TCTCCCGTATGTCGCGCGCCGCCGCGCTGACTCCAACACTGCNATGGTNG
AGTCGCCCGAGGCGGTGCGCCGCGCAACNGCCAACACAATGCTTATAGGA
GAGCAGCATCACTCCACGCCACCTCATTCCCCACGCACATCTCTATGGGT
GTCCCGTATTACTGTGACCTAGCGCACCTCCTCATCCGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_a03.b1 MSMg01no288_a03.b1 CHROMAT_FILE:
MSMg01no288_a03.b1 PHD_FILE: MSMg01no288_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:59 2005
         (686 letters)



>mm_chr10_99221922_99223007
          Length = 1086

 Score = 1303 bits (674), Expect = 0.0
 Identities = 680/682 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgagcgtattctgacctattgagatacaaggaaaacaaactatctaaaaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattcaatgagcgtattctgacctattgagatacaaggaaaacaaactatctaaaaggc 827

                                                                       
Query: 65  cagttataatttgaaattatataaactgatgaaaaatatgagtaccagcccagcagagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cagttataatttgaaattatataaactgatgaaaaatatgagtaccagcccagcagagtt 767

                                                                       
Query: 125 ccaagacaattcccgctcatctgtcttgaaggtcaatattgtgatagagccaatgctaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ccaagacaattcccgctcatctgtcttgaaggtcaatattgtgatagagccaatgctaac 707

                                                                       
Query: 185 ttttgaataatttggccaagttgaggcaaaatgtccctgatggataattgttttattcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttttgaataatttggccaagttgaggcaaaatgtccctgatggataattgttttattcaa 647

                                                                       
Query: 245 aaagcaatgcaagaagcctagaattctggacagtagtggtaaagaggaaaacgaacaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aaagcaatgcaagaagcctagaattctggacagtagtggtaaagaggaaaacgaacaagt 587

                                                                       
Query: 305 aaaagagggaaaagttggaggggagatactgtgagataagctcacatgttccccactcgg 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aaaagaggggaaagttggaggggagatactgtgagataagctcacatgttccccactcgg 527

                                                                       
Query: 365 gggcaccagtatcccaaggggattgaagccaggaaacagttgctacagcttccttttcct 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gggcaccagtattccaaggggattgaagccaggaaacagttgctacagcttccttttcct 467

                                                                       
Query: 425 ttgagttgaaaattcctgatgtcactgccaggcccttcttcctccctagtctataagtac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttgagttgaaaattcctgatgtcactgccaggcccttcttcctccctagtctataagtac 407

                                                                       
Query: 485 gaatgcgtgtgcgcgtggcctctcattccggatgcagtctaccatgtgggagaagttcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaatgcgtgtgcgcgtggcctctcattccggatgcagtctaccatgtgggagaagttcta 347

                                                                       
Query: 545 aaccgccacataggttgcggttacccctcctaagtaagttgaactttgaaaatgtataat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaccgccacataggttgcggttacccctcctaagtaagttgaactttgaaaatgtataat 287

                                                                       
Query: 605 tactcaccaaggctaagctgaccccatttctcaaccgactgagcctcttggaggaacgtt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tactcaccaaggctaagctgaccccatttctcaaccgactgagcctcttggaggaacgtt 227

                                 
Query: 665 tattacgtaatcactacccgtg 686
           ||||||||||||||||||||||
Sbjct: 226 tattacgtaatcactacccgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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