BAC Information

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BAC

Clone NameMSMg01-288G16
Chromosome10 (Build37)
Map Location 17,114,229 - 17,287,610
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G16.T7 (MSMg01no288_g16.b1)MSMg01-288G16.TJ (MSMg01no288_g16.g1)
ACCAG418250AG418251
length758754
length of high quality
(start - end)
324 (39 - 362)242 (71 - 312)
definitionCHROMAT_FILE: MSMg01no288_g16.b1 PHD_FILE: MSMg01no288_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:29 2005CHROMAT_FILE: MSMg01no288_g16.g1 PHD_FILE: MSMg01no288_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,114,229 - 17,114,548)(17,287,369 - 17,287,610)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TATTTAGCTCTCAGAGACAGATTTTTAAACACTGTGTCAGTGGAAGCCAG
AGTACATAGTAGTCTCTGGCTAGCAGAGGTCTAATATTGGAAGGAGTCAG
GATCATAGACAGAGTGAGACTAGTGACTTGGGTAATACATATCTCCTACT
ATTGTTTTTCCAATTTGGACCATTCTATATCATGGAGAAGGTGCGATGTG
ACATCTTAGCACAAGCAATACAGAGGAACATTTTATGCAGAATCCTGGGC
CTTGAAATATGGTTACTTGAGTTTAAATATATTTTAATTGTAGGTAAGTG
AAAGTATACATATTTTGTCTACCCCGCCACACAGCATCATTCTAGAGTTT
TGTGATGAGATAGCGCACAAAGCATATTGGTAGAGAATCAGAGAATTCTA
GGAAGAAATAAGTGGAAGCCCTGAATTCCCACCTCATCACTCAGGGTCTT
AAGCTGGTCAGGTAAGGTAGGGAACCCCAGGGCCAAGGCCTTCTCCATCA
GGACAATGTTTGTATTTCCATTCACACTCACATTCACACACACACACACA
CACACGCTCACACATAGACACTCTTAACCCCACTCCAGAATCTGTCCATG
TACTTTTTGTAGACCTGAGTTTATAACTTCCATCTGGTTTTCATCACAGA
AGTTACAGCATGGCCCCTACTGTTGTCCCTAAAAATTTCCTAAGAATGTC
CAGAATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGCCAAAAACATGGTACTTAAGGGAGCAGCTGTGATGAGCTTGC
CTGGGGATACTCCATTACCCCCTGATACACAGTGTAACTTGTTTTTCCTC
TTCCTGAAGAACAACAGCATTTACTGAAATGTTTAGAGGTGCTAAGCTTC
AAGGACTATTATGAGGGGGTGGGGACAAAAGAGTGGGGAGACAGTTCAGT
CATCAAAGCACAAGGATGTGAGTTCAATCCTCCGTACCTCTGTCAAAGCA
GAGCATGGTGGTACACACTTCATANTTTCAGGTCAGGAACAGTGAAGACA
GGNGGATCCTTTTCTTTTGCTCCCCCCCACCGCACGTCAAACCAGCAAGC
TCCAGCTCAGAGGCCCCCCCGCAAAAAACAAAAACACACACACGGGGGGG
GGGGGGGGCACNCCNCCCNGCCCCCCCCGCCCCCCCGAGAACTATGAGGA
ACACAGAGACCATGAAAAATATCAGGTCAGAAGATCATTCTTGTTATAGG
AAAGGGATAAGCTGCATATATAAATATAACAAATCTTTAGAGAAAACTAG
GACTGCACATGTAAAGAACGAATGTAAAAAATCTTTACAGGGCATATAGG
AAACGGCGACTTGTTTTTTTTTCGACCAAGGGTGGGTTGCCTTTGTTCTA
TGCAGAGTACCATTTTGGACAAACTGAAATCACGATTTGACTGTGCTTTG
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g16.b1 MSMg01no288_g16.b1 CHROMAT_FILE:
MSMg01no288_g16.b1 PHD_FILE: MSMg01no288_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:29 2005
         (324 letters)



>mm_chr10_17114025_17114748
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatttagctctcagagacagatttttaaacactgtgtcagtggaagccagag 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattctttatttagctctcagagacagatttttaaacacagtgtcagtggaagccagag 264

                                                                       
Query: 65  tacatagtagtctctggctagcagaggtctaatattggaaggagtcaggatcatagacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tacatagtagtctctggctagcagaggtctaatattggaaggagtcaggatcatacacag 324

                                                                       
Query: 125 agtgagactagtgacttgggtaatacatatctcctactattgtttttccaatttggacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgagactagtgacttgggtaatacatatctcctactattgtttttccaatttggacca 384

                                                                       
Query: 185 ttctatatcatggagaaggtgcgatgtgacatcttagcacaagcaatacagaggaacatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctatatcatggagaaggtgcgatgtgacatcttagcacaagcaatacagaggaacatt 444

                                                                       
Query: 245 ttatgcagaatcctgggccttgaaatatggttacttgagtttaaatatattttaattgta 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ttatgcagaatcctgggccttgaaatatggttactcgagtttaaatatattttaattgta 504

                               
Query: 305 ggtaagtgaaagtatacata 324
           ||||||||||||||||||||
Sbjct: 505 ggtaagtgaaagtatacata 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no288_g16.g1 MSMg01no288_g16.g1 CHROMAT_FILE:
MSMg01no288_g16.g1 PHD_FILE: MSMg01no288_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:29 2005
         (242 letters)



>mm_chr10_17287169_17287810
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacttaagggagcagctgtgatgagcttgcctggggatactccattaccccctgatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 442 tacttaagggagcagctgtgatgagcttgcctggggatactccattaactcctgatacac 383

                                                                       
Query: 61  agtgtaacttgtttttcctcttcctgaagaacaacagcatttactgaaatgtttagaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtgtaacttgtttttcctcttcctgaagaacaacagcatttactgaaatgtttagaggt 323

                                                                       
Query: 121 gctaagcttcaaggactattatgagggggtggggacaaaagagtggggagacagttcagt 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 gctaagcttcaaggactattatgagggggttgggacaaaagagtggggagacagttcagt 263

                                                                       
Query: 181 catcaaagcacaaggatgtgagttcaatcctccgtacctctgtcaaagcagagcatggtg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagcaaagcacaaggatgtgagttcaatcctccgtacctctgtcaaagcagagcatggtg 203

             
Query: 241 gt 242
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)