BAC Information

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BAC

Clone NameMSMg01-288H11
Chromosome10 (Build37)
Map Location 129,718,643 - 129,718,948
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
Downstream gene5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288H11.T7 (MSMg01no288_h11.b1)MSMg01-288H11.TJ (MSMg01no288_h11.g1)
ACCAG418285AG418286
length761764
length of high quality
(start - end)
593 (47 - 639)304 (75 - 378)
definitionCHROMAT_FILE: MSMg01no288_h11.b1 PHD_FILE: MSMg01no288_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:33 2005CHROMAT_FILE: MSMg01no288_h11.g1 PHD_FILE: MSMg01no288_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTATCTCCGTACCCCATTTTTAATAAGGTTATTTGGTTC
TATGGATTCTAACTTCTTGATCTCTCTGTATATATTGTGTATTAACCCTC
TATTGGATGTAGGATTGTTAAAGATCTTTTCCAAATCTGTTGGTTGCCTT
TTTGCCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTGATTTTAT
GAGGATTCATTTGTCAATTCTTGATATTAGAGCATAAACTATTGGTGTTC
TGTTCAGGAAAATTTCCCCTTTGCTCATGTGCTCGAAGCTCTTCCCCTCT
TTATTTACTATTAGTTTCATTGTATCTGGCTTTATGTGGAGGTCCTTGAT
CTACTTGGACTTGAGCTCCGCACAAAGAGATAAGAATGGATCGATTTGCA
TTCTGCATGTTAACTGCCAGTTGAACTAGTACCATTTGTTGAAAATGCTG
TCTTTTTTCCACTGTATGATTTTAGCTCCTTTGTGAAAGATCAAGTGACC
ATAGGTGTTGGGTTCACTTTTGGGTCTTTAGTTCTATTCCATTGATCTAC
CTGCCTGTCTCTGTACTAATACCATGCAGTTTAACTTGAGGTCAAGGATG
GTGATTTCACCAGAAGTTCTTTTATTGTTTAGAATAGTTTTCACTATCCT
GGGTTTTGTTATTCCAGATGAATTTGCAAATTGTTCTTTCTAACTCTATG
AAGAATTGAGT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACAGCCAACCCCACAACTGTCAAGG
GGTTTTGACAGAAACCCTGATGAATGCATTCCACCCACTTTTCTGAAAAA
ACAAAAACAAAAAACAAAAAACAAACAAACAAAAAAACCCCCAGCAAACA
ACTCAAAAACCGAAAACCAGTTCTTAAAGAAAAACTCCCTCTGCCACTAC
AAGCACACACACACACACCATGTGTGTGCACCCACACAATTGAATGTATT
TTGAAAGTTAATCCTCTTATGTTCAATTCCTTACATCTGTCAGAGGTATC
TGGGCACAATGTTTCTTCTCTACCCTCACCCTCGCCTCAATATGTTCATC
TTTCTACTAATGTTCCATTCCTTTCCTCCTACAGAAAATCTCACAGGCAT
GGTGCCACTTCCAAATCAACAACAACAACAACAACAATAACAACAACAAC
AACAACAACAACTTTTTAGTATCCATGTATATGGCTTTGAAGACAGAATT
CGGGGGAGTGACCCATCTAATAAGCATACATTTAGAAATTATTAAGATGC
TTTATTTAGGGGCAAACTGTCCTATTTGTACCCTCCCTCTGGCTGAGGAA
TAAATTCTGATATGTTTCCAGAAATTACCATGTCTATTATGCATTGCTTA
AGTGAAGTTTATTTTGCTGAGTAATAGTTCCTGGATAAGGAACAAAAAGA
TTAGTGAGGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_h11.g1 MSMg01no288_h11.g1 CHROMAT_FILE:
MSMg01no288_h11.g1 PHD_FILE: MSMg01no288_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:33 2005
         (304 letters)



>mm_chr10_129718329_129719032
          Length = 704

 Score =  557 bits (288), Expect = e-163
 Identities = 301/306 (98%), Gaps = 2/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagccaaccccacaactgtcaaggggttttgacagaaaccctgatgaatgcattccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacagccaaccccacaactgtcaaggggttttgacagaaaccctgatgaatgcattccac 561

                                                                       
Query: 61  ccacttttctg--aaaaaacaaaaacaaaaaacaaaaaacaaacaaacaaaaaaaccccc 118
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccacttttctgaaaaaaaacaaaaacaaaaaacaaaaaacaaacaaacaaaaaaaccccc 501

                                                                       
Query: 119 agcaaacaactcaaaaaccgaaaaccagttcttaaagaaaaactccctctgccactacaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcaaacaactcaaaaaccgaaaaccagttcttaaagaaaaactccctctgccactacaa 441

                                                                       
Query: 179 gcacacacacacacaccatgtgtgtgcacccacacaattgaatgtattttgaaagttaat 238
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtacacacacacacaccatgtgtgtgcacccacacaattgaatgtattttgaaagttaat 381

                                                                       
Query: 239 cctcttatgttcaattccttacatctgtcagaggtatctgggcacaatgtttcttctcta 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 380 cctcttatgttcaattccttacatctgtcagaggtatctgggcacaatgttccatctcta 321

                 
Query: 299 ccctca 304
           ||||||
Sbjct: 320 ccctca 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)