BAC Information

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BAC

Clone NameMSMg01-290D11
Chromosome10 (Build37)
Map Location 43,729,520 - 43,729,713
singlet/doubletsinglet
Overlap genenone
Upstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
Downstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D11.T7 (MSMg01no290_d11.b1)MSMg01-290D11.TJ (MSMg01no290_d11.g1)
ACCAG419558AG419559
length723731
length of high quality
(start - end)
526 (77 - 602)194 (129 - 322)
definitionCHROMAT_FILE: MSMg01no290_d11.b1 PHD_FILE: MSMg01no290_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:41 2005CHROMAT_FILE: MSMg01no290_d11.g1 PHD_FILE: MSMg01no290_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACGC
GGAATTCTTTAATTACTTTCTTATTAGATATTTTTCTTTATTTGCATTTC
AAATGTTATCCCCTTTCCTAGTTTCCCCTCCAAAAATCCCCTATCCTCCC
CCCGCCCCCGCTCCCCAACCCACCCACTCCCACTTCCTGGCCCAGGCATT
CCCCTAAACTGGGGCATAGAACCAAGAGCTCTCCTCCCATTGATGACTGA
CTAGACCATCCTCTGCTACATATGCAGTTAGAGCTACCAATCTCTCCATG
GGTTTTCTTTGATTGGTGGTTTAGCCTCAGGGAGCTCTTGGGTTACTGGT
TAGTTCATATTGTTGTTCCTCCTAGGGGGCAGCAAACTTATTCAGCTCCT
TGGGTACTTTCTCTAGCTCCTTCACTAGGGACCCTGTGCTCCATCTAATG
GATGACTGTGAGCATCGAGTTCTGTATTAGTCAGGCACTGGCAGAGTCTC
TCAGGAGACAGCTATATCAGTCTCCTGTCAGCAAGCTCTTGTTGGCATCT
GCAATAGGGCTGTGTTTGGTGGGTATTTATGGGATGGATCCCTGGGGGTG
GGGGGCAGTCTCTGGATTGTCAGTCCTTCAGTCTCTGCTCCAAAATTTGT
CTCTCTAACTCCTTCCATGGGTATTTTGTTTCCCCTACTAATAAAGATCA
AAGCGTCCACACTTTGATTCTTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGCCAGAGGGGGGGGGGGTG
TCTGCAAATCGGCGCAGCCTCCAGCCCATAAGCTGCTTCAGTTTGCCTGC
CCGTTCCTGGCCCAACTCTGACTCAAGAAAGTCCACTGAGACCTTTCATG
TCCTTACCTCTGGTCCCTTCTAGAATGTGGTCACCCATGTACAAGAACAA
CTGTTAAAAAACAAACAAATGTGATTTTTGAAGTGCTTAGTTTGTTAATT
TTTGAATGAAATCTTCCTTCAGCCTGAGGAAGGAACAATTGAAATGGGTG
TTATAAATGAAACGGTTTTCTTTGTCACCGCCCCCTGCCTTAGGGTCATA
GCGTATGCTTTCAGGGTTGGCATTTGTTCTGAACAAATACTTTTTTCTTA
ATTAAATATATATATTACATATATATGTATATATCATATCCTTAATGTAT
GGCTTAAAAATAGGGAAGTTAAATATTTTTATTATTTATTTATTCTGCTA
CCCTGGGAATTGAATCTGGGTCCCTGTCCATGTCTGGGCCTCTGATCTAT
ACTGTCCTTCAAAATATAGGTTTATGCTACTTTACTCTTTCAATTATCCC
AGTTTTAATAAGCTTAAAAGTTCCTTCAGTAATATCTGTCATAATCTATA
ACTCCCGAAATTTCCTCGACTTTCCAATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d11.g1 MSMg01no290_d11.g1 CHROMAT_FILE:
MSMg01no290_d11.g1 PHD_FILE: MSMg01no290_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:42 2005
         (194 letters)



>mm_chr10_43729320_43729913
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagctgcttcagtttgcctgcccgttcctggcccaactctgactcaagaaagtccactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 taagctgcttcagtttgcctgcccgttcctggcccaactctgactcaagaaagcccactg 260

                                                                       
Query: 61  agacctttcatgtccttacctctggtcccttctagaatgtggtcacccatgtacaagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacctttcatgtccttacctctggtcccttctagaatgtggtcacccatgtacaagaac 320

                                                                       
Query: 121 aactgttaaaaaacaaacaaatgtgatttttgaagtgcttagtttgttaatttttgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgttaaaaaacaaacaaatgtgatttttgaagtgcttagtttgttaatttttgaatg 380

                         
Query: 181 aaatcttccttcag 194
           ||||||||||||||
Sbjct: 381 aaatcttccttcag 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)