BAC Information

Click to search

BAC

Clone NameMSMg01-290D12
Chromosome10 (Build37)
Map Location 62,789,298 - 62,789,545
singlet/doubletsinglet
Overlap geneSirt1
Upstream geneHk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4
Downstream geneDnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D12.T7 (MSMg01no290_d12.b1)MSMg01-290D12.TJ (MSMg01no290_d12.g1)
ACCAG419560
length732732
length of high quality
(start - end)
---247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no290_d12.b1 PHD_FILE: MSMg01no290_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:42 2005CHROMAT_FILE: MSMg01no290_d12.g1 PHD_FILE: MSMg01no290_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTTAAAGAAGAAACAGCA
TTGAAGCATTATTTGGGGGGAAAAACCACACACAAAATCCAGCAACTCAA
CATTCATGAGCAGCTCTGTTCTATACCAGTATGTGCCTGTGCAGTGGAAG
GAAAGCAATTTTGGTAAGGAATTAAAACTTCAGCTTTAAACTCCCAGCAG
GTTGATATTTATCAATGATGAATCAAACAGAAAGTTTTAAATAATTCATT
GACAGCCTTTTTTTTAGTTGTAAAGTCTTCATACCTTTAATATCTGTAAT
TTCAGTGTAAAGTTTTCCTTCCTTCCTNACCAAACCAAAATAATATGAAT
TTGCAGCCAACAAAGTTTACACCTATCAAAAAAAAAAATTTCTTCTGACG
TGAAGTAGTCCATTACGATGTGTTATCTTGCACTTCAAGGGACCAAGTTT
ACTAATTGCTGAGTTTTCATAAAGTAACAAGCTTTTTCTAGGGGCCATCC
ATTTAGATGCTTTAAAATGTTCATGTATTTTGGTTATTACCGAATATTTA
TTGTTAGTACCTGTTTGACTAAACATAACCAGGATATCTGTTATGCTTCT
TTCATTAATTAAACTTTTCTGCCTTTCGCATTACATAGGAAATATATCCC
GTACAGTTCCAGTCGTCTCTGTGTAAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d12.g1 MSMg01no290_d12.g1 CHROMAT_FILE:
MSMg01no290_d12.g1 PHD_FILE: MSMg01no290_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:42 2005
         (247 letters)



>mm_chr10_62789098_62789745
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttttaaagaagaaacagcattgaagcattatttggggggaaaaac-cacacacaa 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 448 tttgtttttaaagaagaaacagcattgaagcattatttggggggaaaaacacacacacaa 389

                                                                       
Query: 60  aatccagcaactcaacattcatgagcagctctgttctataccagtatgtgcctgtgcagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatccagcaactcaacattcatgagcagctctgttctataccagtatgtgcctgtgcagt 329

                                                                       
Query: 120 ggaaggaaagcaattttggtaaggaattaaaacttcagctttaaactcccagcaggttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggaaggaaagcaattttggtaaggaattaaaacttcagctttaaactcccagcaggttga 269

                                                                       
Query: 180 tatttatcaatgatgaatcaaacagaaagttttaaataattcattgacagcctttttttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatttatcaatgatgaatcaaacagaaagttttaaataattcattgacagcctttttttt 209

                   
Query: 240 agttgtaa 247
           ||||||||
Sbjct: 208 agttgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)