Query= MSMg01no290_i19.b1 MSMg01no290_i19.b1 CHROMAT_FILE:
MSMg01no290_i19.b1 PHD_FILE: MSMg01no290_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:08 2005
(504 letters)
>mm_chr10_62758198_62759101
Length = 904
Score = 897 bits (464), Expect = 0.0
Identities = 488/504 (96%), Gaps = 14/504 (2%)
Strand = Plus / Plus
Query: 1 ctacatagacaatgcatcagaaaagcaaaaccctttgattagtcttcagttgaaatatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacatagacaatgcatcagaaaagcaaaaccctttgattagtcttcagttgaaatatga 260
Query: 61 gctgggggtaggcaaaggcatgtgggtctctgtaaattcaaggccagtctggtctatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggggtaggcaaaggcatgtgggtctctgtaaattcaaggccagtctggtctatata 320
Query: 121 actagatactctgtctcaaaagttaaaaaaaaaaaaaaaaaaggaaagggaagaggggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actagatactctgtctcaaaagttaaaaaaaaaaaaaaaaaaggaaagggaagaggggaa 380
Query: 181 aatgttatgagcctgacctagtgccagctatgggtagctgagacaagattgagttaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgttatgagcctgacctagtgccagctatgggtagctgagacaagattgagttaaagg 440
Query: 241 ccgtccttggctacacgcagagaccttattaatttttgttataaatatgagtgtttggga 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgtccttggctacatgcagagaccttattaatttttgttataaatatgagtgtttggga 500
Query: 301 aaaggacaatgaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgattt 360
||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 501 aaaggacaatgaaat-t-------------tgtgtgtgtgtgtgtgtgcatgtgtgattt 546
Query: 361 tgtgtttgtgtttttagtaaagagtgtagctaataatattagtattaaagactatagggc 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgtgtttatgtttttagtaaagagtgtagctaataatattagtattaaagactatagggc 606
Query: 421 gcatggacacatcttctatagtgggataggtaatatttcacactttatatctgtttttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcatggacacatcttctatagtgggataggtaatatttcacactttatatctgtttttta 666
Query: 481 agtagatcttagttctgtttggaa 504
||||||||||||||||||||||||
Sbjct: 667 agtagatcttagttctgtttggaa 690
Score = 70.3 bits (36), Expect = 3e-16
Identities = 40/42 (95%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 315 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtg 356
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgtg 40
Score = 70.3 bits (36), Expect = 3e-16
Identities = 40/42 (95%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 315 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtg 356
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgtg 46
Score = 68.4 bits (35), Expect = 1e-15
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 315 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgc 349
|||||||||||||||||||||||||||||||||||
Sbjct: 13 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgc 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_i19.g1 MSMg01no290_i19.g1 CHROMAT_FILE:
MSMg01no290_i19.g1 PHD_FILE: MSMg01no290_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:08 2005
(679 letters)
>mm_chr10_62916167_62917245
Length = 1079
Score = 1295 bits (670), Expect = 0.0
Identities = 676/678 (99%)
Strand = Plus / Minus
Query: 1 ccagccttgtgtgctggcatccataagacaagagaaatgcaaggctaagtctctactggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ccagccttgtgtgctggcatccataagacaagagaaatgcaaggctaagtctctactggc 819
Query: 61 ctacagaataagactccatctcaaaagacaaacagaagaaaagtggggaatgtaatctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctacagaataagactccatctcaaaagacaaacagaagaaaagtggggaatgtaatctcg 759
Query: 121 ttggtagcgtgcacacccaacatgtatggcccaggattgcatgccagcaccagataaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttggtagcgtgcacacccaacatgtatggcccaggattgcatgccagcaccagataaagc 699
Query: 181 tcgagtggtggcacacacagtgagtgtaaggccactgtggaccacaggagtctccaaata 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tcgagtggtggcacacacggtgagtgtaaggccactgtggaccacaggagtctccaaata 639
Query: 241 aaatgtcttcaaatctactccctgactctatctttacagttactactctagtataaacta 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 638 aaatgtcttcaaatctactccctgactctatcttaacagttactactctagtataaacta 579
Query: 301 gccctgctgtctggctcattttatttatgtattatgtttctagttaacttttctcctaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gccctgctgtctggctcattttatttatgtattatgtttctagttaacttttctcctaag 519
Query: 361 tttatataagtccaaatatggcacatgaagctaatcaggttatatgtagttgcaaaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tttatataagtccaaatatggcacatgaagctaatcaggttatatgtagttgcaaaatct 459
Query: 421 ttatttttcatttagttatttagtttcattttaactagttaagagcaaactacttctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttatttttcatttagttatttagtttcattttaactagttaagagcaaactacttctcag 399
Query: 481 aagggttaaaatgattcatgtagttttctcaaggtaagaatctctggtagaccatcttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagggttaaaatgattcatgtagttttctcaaggtaagaatctctggtagaccatcttgc 339
Query: 541 tattagtcaataacctcgatgagtgcagtaactataatcatgaaatttgttatcgatcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tattagtcaataacctcgatgagtgcagtaactataatcatgaaatttgttatcgatcaa 279
Query: 601 caaccctatcaagctcttaagtattatattagttatttaataatctagagcatcttgcac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caaccctatcaagctcttaagtattatattagttatttaataatctagagcatcttgcac 219
Query: 661 tggttcttttttttaata 678
||||||||||||||||||
Sbjct: 218 tggttcttttttttaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
